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Report for CCDS57391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57391.1 Public Mus musculus 5 Cux1 23 108 98 CCDS HistoryNCBI Gene:13047Re-query CCDS DB by CCDS ID:57391.1Re-query CCDS DB by GeneID:13047See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57391.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176745.7 ENSMUSP00000135512.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176745.7Link to Ensembl Protein Viewer:ENSMUSP00000135512.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176745Re-query CCDS DB by Protein ID:ENSMUSP00000135512
Original member NCBI NM_198602.3 NP_941004.2 Updated not alive Link to Nucleotide Sequence:NM_198602.3Link to Protein Sequence:NP_941004.2Re-query CCDS DB by Nucleotide ID:NM_198602Re-query CCDS DB by Protein ID:NP_941004
Current member NCBI NM_198602.4 NP_941004.2 Accepted alive Link to Nucleotide Sequence:NM_198602.4Link to Protein Sequence:NP_941004.2Re-query CCDS DB by Nucleotide ID:NM_198602Re-query CCDS DB by Protein ID:NP_941004Link to BLAST:NP_941004.2

Chromosomal Locations for CCDS 57391.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136248911 136248980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136249168 136249232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136250524 136250604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136251371 136251427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136252543 136252626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136254067 136254183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136256232 136256344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136256800 136256866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136257913 136258040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136314307 136314403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136315999 136316047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136319781 136319839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136326750 136326932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136332624 136332728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136340089 136340137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136360002 136360068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136363259 136363335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136370118 136370241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136373322 136373459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136392315 136392393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136407980 136408027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136485741 136485851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136567178 136567240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGGCGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAGAGAGAAC
TTGATGCCACCGCAACAGTATTGGCAAACAGGCAAGATGAGAGCGAACAGTCCAGAAAGCGGCTCATTGA
GCAGAGCCGAGAATTCAAGAAGAACACTCCAGAGGATTTACGCAAGCAGGTAGCACCACTGCTAAAGAGC
TTCCAAGGGGAGATTGATGCACTGAGTAAAAGAAGCAAAGAAGCAGAGGCAGCCTTCTTGACTGTGTACA
AGAGACTAATTGATGTTCCAGATCCGGTACCAGCCCTGGACGTCGGGCAACAGCTGGAAATAAAAGTGCA
GCGTCTACACGACATTGAAACAGAGAACCAGAAACTTAGGGAAACACTAGAAGAGTACAACAAGGAGTTT
GCTGAAGTGAAAAATCAAGAGGTTACGATAAAAGCACTTAAGGAGAAAATCCGAGAATACGAGCAGACCC
TGAAGAGTCAGGCCGAGACCATTGCTCTGGAGAAAGAGCAGAAGCTACAAAATGATTTTGCAGAGAAGGA
GAGAAAGCTGCAAGAGACACAGATGTCCACCACCTCAAAACTGGAGGAAGCTGAGCACAAACTCCAGACT
CTGCAAACAGCCCTGGAAAAAACTCGAACAGAATTATTTGACCTGAAAACCAAATATGATGAAGAAACTA
CTGCAAAGGCCGATGAGATCGAGATGATCATGACCGACCTTGAACGAGCCAACCAGAGGGCAGAGGTGGC
ACAGAGAGAAGCAGAGACTTTAAGGGAACAGCTCTCATCGGCCAACCACTCTCTCCAACTGGCCTCGCAG
ATCCAGAAGGCTCCAGATGTGGCCATAGAGGTGCTGACCCGATCCAGCCTAGAAGTAGAGTTGGCTGCCA
AAGAGCGGGAGATCGCCCAGCTGGTGGAAGATGTGCAGCGACTCCAGGCCAGCCTCACCAAGCTACGTGA
GAATTCCGCCAGCCAGATCTCACAGCTGGAGCAGCAACTGAATGCCAAGAATAGCACACTCAAACAACTG
GAAGAAAAACTCAAAGGCCAGGCTGACTATGAAGAAGTGAAGAAAGAGCTGAACACCCTGAAGTCCATGG
AGTTTGCACCATCGGAGGGAGCAGGGACACAGGACTCTACCAAGCCCCTGGAGGTTTTACTCCTGGAGAA
GAACCGCTCGCTGCAGTCCGAGAATGCCACGCTGCGCATCTCCAACAGTGACCTGAGCGGGCGCTGTGCG
GAGCTGCAGATCCACCTCACTGAGGCCACAGCCAAGGCTGTTGAGCAGAAGGAGCTGATCGCTCGCTTGG
AGCAGGACCTCAGCACCATCCAGTCCATCCAACGGCCTGATGCCGAGGGAGCTTCCGAGCAAGGCCTAGA
GAAGATTCCAGAACCCATCAAGGAAGCTACAGCTCTGTTCTATGGACCCTCAATGTCATCCAGTGGGACC
CTTCCAGAAGGCCAGGTGGACTCCCTGCTTTCCATCATCTCCAGCCAAAGGGAACGTTTCCGCACCCGGA
ACCAAGAGCTGGAAGCCGAGAGCCGCATGGCCCAGCACACCATCCAGGCCCTGCAGAGCGAGCTGGACAG
CCTGCGCGCTGACAACATCAAACTCTTTGAGAAGATCAAGTTCCTGCAGAGTTACCCTGGCAGAGGTATC
GGCAGTGACGACACGGAGCTGCGATACTCCTCCCAATACGAGGAACGCCTGGACCCTTTCTCCTCCTTCA
GCAAGAGGGAGCGGCAGAGGAAGTACCTGGGCCTGAGCCCCTGGGACAAGGCCACACTTGGCATGGGCCG
TCTGATTCTCTCCAACAAGATGGCCCGCACCATCAGCTTCTTTTACACCTTGTTCCTGCACTGCCTGGTC
TTTCTGGTGCTGTACAAGCTGGCATGGAGTGAGAGTGTGGAGAGAGACTGTGCTGCCACCTGCGCCAAGA
AGTTCGCCGATCATCTGCACAAATTCCACGAGAGTGACAACGGAGCAGCAGCTGGTGACTTATGGCAGTG
A

Translation (676 aa):
MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKS
FQGEIDALSKRSKEAEAAFLTVYKRLIDVPDPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEF
AEVKNQEVTIKALKEKIREYEQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT
LQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ
IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKNSTLKQL
EEKLKGQADYEEVKKELNTLKSMEFAPSEGAGTQDSTKPLEVLLLEKNRSLQSENATLRISNSDLSGRCA
ELQIHLTEATAKAVEQKELIARLEQDLSTIQSIQRPDAEGASEQGLEKIPEPIKEATALFYGPSMSSSGT
LPEGQVDSLLSIISSQRERFRTRNQELEAESRMAQHTIQALQSELDSLRADNIKLFEKIKFLQSYPGRGI
GSDDTELRYSSQYEERLDPFSSFSKRERQRKYLGLSPWDKATLGMGRLILSNKMARTISFFYTLFLHCLV
FLVLYKLAWSESVERDCAATCAKKFADHLHKFHESDNGAAAGDLWQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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