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Report for CCDS57421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57421.1 Public Mus musculus 6 Gimap4 23 108 98 CCDS HistoryNCBI Gene:107526Re-query CCDS DB by CCDS ID:57421.1Re-query CCDS DB by GeneID:107526See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57421.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118802.7 ENSMUSP00000112530.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118802.7Link to Ensembl Protein Viewer:ENSMUSP00000112530.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118802Re-query CCDS DB by Protein ID:ENSMUSP00000112530
Original member Current member NCBI NM_001243200.1 NP_001230129.1 Accepted alive Link to Nucleotide Sequence:NM_001243200.1Link to Protein Sequence:NP_001230129.1Re-query CCDS DB by Nucleotide ID:NM_001243200Re-query CCDS DB by Protein ID:NP_001230129Link to BLAST:NP_001230129.1

Chromosomal Locations for CCDS 57421.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48686852 48686909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48690371 48690457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48690842 48691299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGAAGTCCAGTGCGGTGGTGCGGGGTTCATCCCAGAAAGTTCAAGGAGCAGCCATGAGCTTGGAAACC
AAGATCAAGGAATTCCCCAACTGAGAATTGTCTTACTTGGAAAAACTGGAGCAGGAAAGAGTTCAACAGG
GAACAAGGTGATGCATGAGTTCCAGAATCGCTACTGTTTGTTCAACAACAGAGCCTCAGGCGCTGAAAAG
GAAGAGCAGAAGATGCAATTGTTGACCTTGGTCCAGAGCATGGTGAGGGAAAATGGTGGAAGATGCTTTA
CTAATAAGATGTATGAAAGTGCCGAGTGTGTGATCCAGAAAGAGACCTTGAGGATGCAAGAATTATACAG
AGAGGAGCTAGAGAGGGAGAAAGCACGGATAAGACGGGAGTATGAAGAACAGATTAAAGATCTGAGAGAT
GAACTGGAGAGGGAAATAAGAAGGGCACGTATGGAGAGGGAATTCAAGGAGAGGGAGGCTATCTTTACAA
AGAATCAACAAAATGCTAGGAAGGAAGTTGAGAACACAAGTATGATACTTGAATTAATTATAAAAGCATG
GGAGATTGCTTCCTTTATCTTCAACCAGTTTATGAAAGACTAG

Translation (200 aa):
MEVQCGGAGFIPESSRSSHELGNQDQGIPQLRIVLLGKTGAGKSSTGNKVMHEFQNRYCLFNNRASGAEK
EEQKMQLLTLVQSMVRENGGRCFTNKMYESAECVIQKETLRMQELYREELEREKARIRREYEEQIKDLRD
ELEREIRRARMEREFKEREAIFTKNQQNARKEVENTSMILELIIKAWEIASFIFNQFMKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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