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Report for CCDS57441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57441.1 Public Mus musculus 6 Foxp1 23 108 98 CCDS HistoryNCBI Gene:108655Re-query CCDS DB by CCDS ID:57441.1Re-query CCDS DB by GeneID:108655See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57441.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177437.7 ENSMUSP00000135809.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177437.7Link to Ensembl Protein Viewer:ENSMUSP00000135809.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177437Re-query CCDS DB by Protein ID:ENSMUSP00000135809
Original member Current member NCBI NM_001197322.1 NP_001184251.1 Accepted alive Link to Nucleotide Sequence:NM_001197322.1Link to Protein Sequence:NP_001184251.1Re-query CCDS DB by Nucleotide ID:NM_001197322Re-query CCDS DB by Protein ID:NP_001184251Link to BLAST:NP_001184251.1

Chromosomal Locations for CCDS 57441.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 98930090 98930234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98935274 98935440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98939719 98939788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98941536 98941657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98944619 98944720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98945347 98945426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98945534 98945735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98954321 98954404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98966027 98966114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98978133 98978237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99003200 99003404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99009904 99010057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99015424 99015510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99016528 99016647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGATGACACCTCAGGTTATCACTCCTCAACAAATGCAGCAGATCCTCCAGCAGCAGGTGCTGAGCCCCC
AGCAGCTCCAGGTTCTCCTCCAGCAGCAGCAGGCCCTCATGCTTCAACAGCAGCTTCAAGAATTTTATAA
AAAACAACAGGAACAGTTGCAGCTTCAACTTCTCCAACAGCAACATGCTGGAAAACAGCCGAAAGAGCAG
CAGCAGGTGGCTACCCAGCAGTTGGCTTTCCAGCAGCAGCTTCTCCAGATGCAGCAGCTGCAGCAGCAGC
ACCTCTTGTCTCTCCAGCGCCAAGGCCTCCTAACAATTCAGCCGGGGCAGCCTGCCCTTCCCCTCCAACC
CCTCGCTCAAGGCATGATTCCAACGGAACTGCAGCAGCTCTGGAAAGAAGTGACAAGTGCCCACACTGCA
GAGGAAACCACAAGCAGCAACCACAGCAGCCTAGACCTGACCAGCACATGTGTCTCGTCCTCGGCACCTT
CCAAGTCCTCCCTAATCATGAACCCGCATGCCTCTACCAATGGACAGCTCTCGGTCCACACTCCCAAAAG
GGAAAGCTTGTCCCACGAGGAGCACCCCCACAGCCACCCTCTCTATGGACATGGCGTATGCAAGTGGCCA
GGCTGTGAGGCGGTTTGTGACGACTTCCCAGCCTTTCTAAAACATCTCAACAGTGAGCATGCGCTGGACG
ATAGAAGCACAGCTCAATGTAGAGTACAAATGCAGGTTGTACAGCAGTTAGAGCTACAGCTTGCAAAAGA
CAAAGAGCGCCTGCAAGCCATGATGACCCACCTGCATGTGAAGTCTACAGAACCCAAAGCTGCCCCTCAG
CCCCTGAATCTGGTATCAAGTGTCACCCTCTCCAAGTCTGCCTCAGAGGCTTCTCCACAGAGCTTACCTC
ATACTCCAACAACCCCCACCGCCCCCCTGACTCCTGTCACCCAAGGCCCCTCCGTCATCACCACCACCAG
CATGCACACGGTGGGACCTATCCGCAGGCGGTACTCAGACAAATACAACGTGCCCATTTCTTCAGCAGAT
ATTGCGCAGAACCAAGAATTTTATAAGAACGCGGAAGTTAGACCACCATTTACATATGCATCTTTAATCA
GGCAGGCCATTCTCGAATCTCCAGAAAAGCAGCTAACACTAAACGAAATCTATAACTGGTTCACACGAAT
GTTTGCTTACTTCCGACGCAATGCAGCCACGTGGAAGAATGCAGTGCGTCATAATCTTAGTCTCCACAAG
TGTTTTGTGCGAGTAGAGAACGTTAAAGGGGCAGTATGGACAGTGGATGAAGTAGAGTTCCAAAAACGGA
GGCCACAAAAGATCAGTGGTAACCCTTCCCTTATTAAAAACATGCAGAGCAGCCACGCCTACTGCACACC
TCTCAATGCAGCTTTACAGGCTTCCATGGCTGAGAATAGTATACCTCTGTACACTACCGCTTCCATGGGA
AATCCCACTCTGGGCAGCCTGGCCAGTGCCATCCGGGAGGAGCTGAACGGGGCCATGGAGCACACCAACA
GCAACGAGAGTGACAGCAGTCCAGGCAGATCCCCTATGCAAGCTGTGCACCCCATACACGTCAAAGAAGA
ACCCCTCGACCCCGAGGAAGCTGAAGGCCCTCTGTCCTTAGTGACAACAGCCAACCACAGTCCAGATTTT
GACCATGACAGAGATTACGAAGACGAACCAGTAAATGAGGACATGGAGTGA

Translation (576 aa):
MMTPQVITPQQMQQILQQQVLSPQQLQVLLQQQQALMLQQQLQEFYKKQQEQLQLQLLQQQHAGKQPKEQ
QQVATQQLAFQQQLLQMQQLQQQHLLSLQRQGLLTIQPGQPALPLQPLAQGMIPTELQQLWKEVTSAHTA
EETTSSNHSSLDLTSTCVSSSAPSKSSLIMNPHASTNGQLSVHTPKRESLSHEEHPHSHPLYGHGVCKWP
GCEAVCDDFPAFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDKERLQAMMTHLHVKSTEPKAAPQ
PLNLVSSVTLSKSASEASPQSLPHTPTTPTAPLTPVTQGPSVITTTSMHTVGPIRRRYSDKYNVPISSAD
IAQNQEFYKNAEVRPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHK
CFVRVENVKGAVWTVDEVEFQKRRPQKISGNPSLIKNMQSSHAYCTPLNAALQASMAENSIPLYTTASMG
NPTLGSLASAIREELNGAMEHTNSNESDSSPGRSPMQAVHPIHVKEEPLDPEEAEGPLSLVTTANHSPDF
DHDRDYEDEPVNEDME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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