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Report for CCDS57576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57576.1 Public Mus musculus 7 Rrp8 23 108 98 CCDS HistoryNCBI Gene:101867Re-query CCDS DB by CCDS ID:57576.1Re-query CCDS DB by GeneID:101867See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57576.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098148.5 ENSMUSP00000095752.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098148.5Link to Ensembl Protein Viewer:ENSMUSP00000095752.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098148Re-query CCDS DB by Protein ID:ENSMUSP00000095752
Original member Current member NCBI NM_133951.1 NP_598712.1 Accepted alive Link to Nucleotide Sequence:NM_133951.1Link to Protein Sequence:NP_598712.1Re-query CCDS DB by Nucleotide ID:NM_133951Re-query CCDS DB by Protein ID:NP_598712Link to BLAST:NP_598712.1

Chromosomal Locations for CCDS 57576.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105733024 105733143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105733352 105733448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105733532 105733638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105733768 105733897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105734000 105734453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105734690 105735056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105737065 105737301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGAGCACCCCGAGTAGCGGAGAGAGGACTTGTAGCCGTCTCACTCGCCAACGCTTCAGCTCACCCCTGA
TTGAGGTCGTTCTCTGTGTTGTCCAGCCACAAGCGCACCGCCACCGCGTTGCCCTCCCGGCACTGAGTGA
AAATGTCGTCCATAGCAGCGTCCCGGCACAGAGACCCCGGGACTGGGGAAGCCTCGGGGGACTGAGGGAG
AACAGAGACAAGAGAATGACTCTCTGTGGACGCAAGCGCCGCCATCTCTTGGCCACATTACGGGCTCTGG
AAGCAGCATCTCTCTCCCAACAAACCCCCAGCCTACCTGGCAGTGACTCTGAGGAGGAGGAGGAGGTAGG
AAGGAAGAAGAGACACCTCCAAAGGCCCTCACTTGCCAGCGTCTCAAAGGAAGTAGGGAAGAAAAGAAAA
GGGAAATGTCAGAAACAGGCGCCATCCATCAGTGACTCTGAGGGGAAAGAAATAAGAAGAAAATGCCACA
GACAAGCTCCTCCTCTTGGTGGGGTCTCTGCTGGAGAAGAAAAAGGAAAGAGAAAATGCCAGGAATATTC
CTCTTTACACCTAACCCAGCCCCTGGACAGTGTTGACCAAACAGTTCACAATTCCAGGACGAGTACTGCT
ACAATTGACCCATCCAAGCCAAGCCCTGAGTCTATGTCACCTAACTCCTCACACACCCTGAGCCGCAAGC
AGTGGCGGAACCGGCAGAAAAATAAGCGGAGACACAAGAACAAATTTCGGCCACTCCAGACACCAGAGCA
GGCTCCTCCCAAGGCTTCCATAGAGGAGACTGAGGTGCCTCCTGTCCCAAAGTCAGATAGTCAAGAGTCT
AGAGCTGGAGCCCTGCGAGCACGCATGACACAACGCCTGGATGGGGCCCGATTTCGCTACCTTAATGAAC
AGTTGTACTCAGGGCCCAGCAGTGCTGCCCGACGCCTATTCCAGGAAGACCCTGAGGCTTTTCTCCTTTA
TCACCGTGGCTTCCAGAGACAAGTAAAGAAGTGGCCACTGCACCCAGTGGACCGTATTGCCAAAGATCTC
CGCCAGAAGCCTGCATCCTTAGTGGTAGCTGACTTTGGCTGTGGAGATTGCCGCCTAGCTTCAAGTGTCC
GGAACCCTGTGCACTGTTTTGATTTGGCTTCTCTGGACCCCAGGGTCACAGTATGTGACATGGCCCAGGT
GCCTCTGGAGGATGAATCTGTAGATGTGGCTGTGTTTTGCCTTTCACTGATGGGAACTAACATCAGGGAC
TTCCTTGAGGAGGCAAATCGAGTGCTAAAAACAGGGGGTCTTCTCAAAGTAGCTGAAGTCAGCAGCCGCT
TTGAGGATATTCGGACCTTTTTGGGGGCTGTGACCAAACTCGGCTTTAAGATTATCTACAAGGACCTGAC
CAACAGCCACTTCTTCTTGTTTGACTTTGAAAAGACCGGACCTCCTCGAGTAGGACCCAAAGCCCAACTC
TCAGGCCTTAAACTTCAGCCCTGTCTCTACAAGCGCAGGTGA

Translation (503 aa):
MSTPSSGERTCSRLTRQRFSSPLIEVVLCVVQPQAHRHRVALPALSENVVHSSVPAQRPRDWGSLGGLRE
NRDKRMTLCGRKRRHLLATLRALEAASLSQQTPSLPGSDSEEEEEVGRKKRHLQRPSLASVSKEVGKKRK
GKCQKQAPSISDSEGKEIRRKCHRQAPPLGGVSAGEEKGKRKCQEYSSLHLTQPLDSVDQTVHNSRTSTA
TIDPSKPSPESMSPNSSHTLSRKQWRNRQKNKRRHKNKFRPLQTPEQAPPKASIEETEVPPVPKSDSQES
RAGALRARMTQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIAKDL
RQKPASLVVADFGCGDCRLASSVRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRD
FLEEANRVLKTGGLLKVAEVSSRFEDIRTFLGAVTKLGFKIIYKDLTNSHFFLFDFEKTGPPRVGPKAQL
SGLKLQPCLYKRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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