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Report for CCDS57996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57996.1 Public Homo sapiens 1 NSUN4 24 110 108 CCDS HistoryNCBI Gene:387338Re-query CCDS DB by CCDS ID:57996.1Re-query CCDS DB by GeneID:387338See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57996.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537428.2 ENSP00000437758.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537428.2Link to Ensembl Protein Viewer:ENSP00000437758.1Re-query CCDS DB by Nucleotide ID:ENST00000537428Re-query CCDS DB by Protein ID:ENSP00000437758
Original member Current member NCBI NM_001256127.3 NP_001243056.1 Accepted alive Link to Nucleotide Sequence:NM_001256127.3Link to Protein Sequence:NP_001243056.1Re-query CCDS DB by Nucleotide ID:NM_001256127Re-query CCDS DB by Protein ID:NP_001243056Link to BLAST:NP_001243056.1
Original member Current member NCBI NM_001256128.3 NP_001243057.1 Accepted alive Link to Nucleotide Sequence:NM_001256128.3Link to Protein Sequence:NP_001243057.1Re-query CCDS DB by Nucleotide ID:NM_001256128Re-query CCDS DB by Protein ID:NP_001243057Link to BLAST:NP_001243057.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243056.1 335 Q96CB9-4 335 100% 0 0
NP_001243057.1 335 Q96CB9-4 335 100% 0 0

Chromosomal Locations for CCDS 57996.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 46344855 46345144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46346921 46347075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46352868 46353028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46360704 46360828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46361570 46361846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGACTTACAGTGTGCAGTTTGGAGATCTTTGGCCATCAATCCGTGTCAGTCTCCTCTCAGAGCAGAAGT
ATGGTGCACTGGTCAATAACTTTGCTGCCTGGGATCATGTAAGTGCTAAGCTGGAGCAGCTGAGTGCCAA
GGATTTTGTGAATGAAGCCATCTCCCACTGGGAACTGCAGTCTGAGGGTGGCCAATCTGCAGCCCCATCC
CCTGCCTCCTGGGCCTGCAGTCCGAACCTTCGATGCTTCACTTTTGACAGAGGGGATATCAGTCGCTTCC
CTCCTGCCAGACCTGGCAGCCTGGGTGTCATGGAGTACTACCTGATGGATGCTGCCTCCTTGCTGCCTGT
TCTGGCCCTCGGCCTGCAGCCTGGGGACATCGTGCTTGACCTATGTGCAGCTCCTGGGGGAAAGACACTA
GCGTTGCTTCAGACTGGCTGTTGCCGCAATCTTGCTGCCAATGATCTCTCCCCGTCCCGAATAGCCAGAC
TACAGAAGATCCTTCACAGCTATGTGCCTGAAGAGATCAGGGATGGAAATCAAGTTCGAGTTACCTCATG
GGATGGCAGGAAATGGGGAGAACTGGAGGGGGACACCTATGACCGGGTGCTGGTGGATGTGCCCTGTACC
ACAGACCGCCACTCCCTTCATGAGGAGGAGAACAACATCTTTAAGCGGTCAAGGAAGAAGGAGCGACAGA
TATTGCCTGTGCTGCAAGTGCAGCTTCTTGCGGCTGGACTCCTTGCCACCAAACCAGGAGGCCATGTTGT
CTATTCTACCTGCTCACTCTCACACTTACAGAACGAGTATGTGGTGCAAGGTGCCATTGAGCTCCTGGCC
AATCAATACAGCATCCAGGTACAGGTGGAAGATCTGACTCACTTCCGAAGGGTTTTCATGGACACATTTT
GTTTCTTCTCATCCTGTCAGGTTGGGGAGCTGGTAATACCAAACCTCATGGCCAATTTTGGCCCCATGTA
CTTCTGCAAAATGCGTAGGCTGACATAG

Translation (335 aa):
MTYSVQFGDLWPSIRVSLLSEQKYGALVNNFAAWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPS
PASWACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTL
ALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCT
TDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLA
NQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGELVIPNLMANFGPMYFCKMRRLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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