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Report for CCDS5806.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5806.2 Public Homo sapiens 7 OPN1SW 24 110 108 CCDS HistoryNCBI Gene:611Re-query CCDS DB by CCDS ID:5806.2Re-query CCDS DB by GeneID:611See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 5806.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249389.3 ENSP00000249389.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000249389.3Link to Ensembl Protein Viewer:ENSP00000249389.3Re-query CCDS DB by Nucleotide ID:ENST00000249389Re-query CCDS DB by Protein ID:ENSP00000249389
Original member Current member NCBI NM_001385125.1 NP_001372054.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001385125.1Link to Protein Sequence:NP_001372054.1Re-query CCDS DB by Nucleotide ID:NM_001385125Re-query CCDS DB by Protein ID:NP_001372054Link to BLAST:NP_001372054.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372054.1 345 P03999 345 100% 0 0

Chromosomal Locations for CCDS 5806.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128772540 128772659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128773649 128773888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128774498 128774663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128774986 128775154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128775439 128775781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGTCGGAGGAAGAGTTTTATCTGTTCAAAAATATCTCTTCAGTGGGGCCGTGGGATGGGCCTCAGTACC
ACATTGCCCCTGTCTGGGCCTTCTACCTCCAGGCAGCTTTCATGGGCACTGTCTTCCTTATAGGGTTCCC
ACTCAATGCCATGGTGCTGGTGGCCACACTGCGCTACAAAAAGTTGCGGCAGCCCCTCAACTACATTCTG
GTCAACGTGTCCTTCGGAGGCTTCCTCCTCTGCATCTTCTCTGTCTTCCCTGTCTTCGTCGCCAGCTGTA
ACGGATACTTCGTCTTCGGTCGCCATGTTTGTGCTTTGGAGGGCTTCCTGGGCACTGTAGCAGGTCTGGT
TACAGGATGGTCACTGGCCTTCCTGGCCTTTGAGCGCTACATTGTCATCTGTAAGCCCTTCGGCAACTTC
CGCTTCAGCTCCAAGCATGCACTGACGGTGGTCCTGGCTACCTGGACCATTGGTATTGGCGTCTCCATCC
CACCCTTCTTTGGCTGGAGCCGGTTCATCCCTGAGGGCCTGCAGTGTTCCTGTGGCCCTGACTGGTACAC
CGTGGGCACCAAATACCGCAGCGAGTCCTATACGTGGTTCCTCTTCATCTTCTGCTTCATTGTGCCTCTC
TCCCTCATCTGCTTCTCCTACACTCAGCTGCTGAGGGCCCTGAAAGCTGTTGCAGCTCAGCAGCAGGAGT
CAGCTACGACCCAGAAGGCTGAACGGGAGGTGAGCCGCATGGTGGTTGTGATGGTAGGATCCTTCTGTGT
CTGCTACGTGCCCTACGCGGCCTTCGCCATGTACATGGTCAACAACCGTAACCATGGGCTGGACTTACGG
CTTGTCACCATTCCTTCATTCTTCTCCAAGAGTGCTTGCATCTACAATCCCATCATCTACTGCTTCATGA
ATAAGCAGTTCCAAGCTTGCATCATGAAGATGGTGTGTGGGAAGGCCATGACAGATGAATCCGACACATG
CAGCTCCCAGAAAACAGAAGTTTCTACTGTCTCGTCTACCCAAGTTGGCCCCAACTGA

Translation (345 aa):
MSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL
VNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNF
RFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPL
SLICFSYTQLLRALKAVAAQQQESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLR
LVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQKTEVSTVSSTQVGPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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