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Report for CCDS58157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58157.1 Public Homo sapiens 11 PAAF1 24 110 108 CCDS HistoryNCBI Gene:80227Re-query CCDS DB by CCDS ID:58157.1Re-query CCDS DB by GeneID:80227See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58157.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376384.9 ENSP00000365564.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376384.9Link to Ensembl Protein Viewer:ENSP00000365564.5Re-query CCDS DB by Nucleotide ID:ENST00000376384Re-query CCDS DB by Protein ID:ENSP00000365564
Original member Current member EBI ENST00000536003.5 ENSP00000438124.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536003.5Link to Ensembl Protein Viewer:ENSP00000438124.1Re-query CCDS DB by Nucleotide ID:ENST00000536003Re-query CCDS DB by Protein ID:ENSP00000438124
Original member Current member EBI ENST00000544552.5 ENSP00000441494.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544552.5Link to Ensembl Protein Viewer:ENSP00000441494.1Re-query CCDS DB by Nucleotide ID:ENST00000544552Re-query CCDS DB by Protein ID:ENSP00000441494
Original member Current member NCBI NM_001267803.2 NP_001254732.1 Accepted alive Link to Nucleotide Sequence:NM_001267803.2Link to Protein Sequence:NP_001254732.1Re-query CCDS DB by Nucleotide ID:NM_001267803Re-query CCDS DB by Protein ID:NP_001254732Link to BLAST:NP_001254732.1
Original member Current member NCBI NM_001267804.2 NP_001254733.1 Accepted alive Link to Nucleotide Sequence:NM_001267804.2Link to Protein Sequence:NP_001254733.1Re-query CCDS DB by Nucleotide ID:NM_001267804Re-query CCDS DB by Protein ID:NP_001254733Link to BLAST:NP_001254733.1
Original member Current member NCBI NM_001267805.2 NP_001254734.1 Accepted alive Link to Nucleotide Sequence:NM_001267805.2Link to Protein Sequence:NP_001254734.1Re-query CCDS DB by Nucleotide ID:NM_001267805Re-query CCDS DB by Protein ID:NP_001254734Link to BLAST:NP_001254734.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254732.1 375 Q9BRP4-2 375 100% 0 0
NP_001254733.1 375 Q9BRP4-2 375 100% 0 0
NP_001254734.1 375 Q9BRP4-2 375 100% 0 0

Chromosomal Locations for CCDS 58157.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73887063 73887099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73887354 73887457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73891112 73891201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73899146 73899244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73900270 73900420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73909399 73909593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73914413 73914504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73916545 73916660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73918950 73919032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73924615 73924697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73927285 73927362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGCTGGTGCCATGCTTCTTGTACAGTCTGCAGAACCGGAAACCATCTTTGTATGGCAGCCTGACTTGTC
AAGGAATTGGCCTAGATGGCATCCCAGAGGTTACAGCTTCAGAAGGATTTACTGTGAATGAAATAAACAA
GAAAAGCATTCATATTTCATGTCCAAAGGAAAATGCATCTTCTAAGTTTTTGGCACCATATACTACTTTT
TCCAGAATTCATACAAAGAGTATAACATGCCTGGACATTTCCAGCAGAGGAGGTCTTGGTGTGTCTTCTA
GTACTGACGGGACCATGAAAATCTGGCAGGCTTCCAATGGAGAACTCAGGAGAGTATTGGAAGGACATGT
GTTTGATGTGAATTGTTGCAGGTTTTTCCCATCAGGCCTTGTGGTCCTGAGTGGGGGAATGGATGCCCAG
CTGAAGATATGGTCAGCTGAAGATGCTAGCTGCGTGGTGACCTTCAAAGGTCACAAAGGAGGTATCCTGG
ATACAGCCATCGTTGATCGGGGGAGGAATGTGGTGTCTGCTTCTCGAGATGGGACAGCACGACTTTGGGA
TTGTGGGCGCTCAGCCTGCTTGGGAGTCCTTGCAGATTGTGGTTCTTCTATCAATGGAGTGGCGGTGGGT
GCTGCTGACAACTCCATAAACCTTGGCTCCCCTGAGCAGATGCCCAGTGAACGGGAGGTTGGAACAGAGG
CCAAAATGCTGCTCTTGGCCCGGGAAGATAAGAAACTTCAGTGCTTGGGACTACAGAGCAGGCAGCTGGT
GTTCCTCTTTATTGGCTCAGACGCTTTCAACTGCTGTACTTTTCTCTCTGGCTTCTTGCTATTGGCTGGG
ACTCAAGATGGAAACATTTATCAGCTGGATGTGAGGAGTCCAAGGGCTCCGGTACAAGTCATCCACAGAT
CAGGAGCACCAGTTCTATCCCTGCTAAGTGTCAGAGATGGATTCATTGCTAGCCAAGGTGATGGAAGCTG
TTTTATTGTCCAGCAAGACTTAGACTATGTCACTGAGCTCACTGGGGCTGACTGTGACCCTGTGTACAAG
GTAGCCACATGGGAGAAGCAGATCTACACATGCTGTCGAGACGGTCTTGTACGACGCTACCAGCTTTCTG
ACCTCTGA

Translation (375 aa):
MLVPCFLYSLQNRKPSLYGSLTCQGIGLDGIPEVTASEGFTVNEINKKSIHISCPKENASSKFLAPYTTF
SRIHTKSITCLDISSRGGLGVSSSTDGTMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQ
LKIWSAEDASCVVTFKGHKGGILDTAIVDRGRNVVSASRDGTARLWDCGRSACLGVLADCGSSINGVAVG
AADNSINLGSPEQMPSEREVGTEAKMLLLAREDKKLQCLGLQSRQLVFLFIGSDAFNCCTFLSGFLLLAG
TQDGNIYQLDVRSPRAPVQVIHRSGAPVLSLLSVRDGFIASQGDGSCFIVQQDLDYVTELTGADCDPVYK
VATWEKQIYTCCRDGLVRRYQLSDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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