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Report for CCDS58786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58786.1 Public Homo sapiens 21 SAMSN1 24 110 108 CCDS HistoryNCBI Gene:64092Re-query CCDS DB by CCDS ID:58786.1Re-query CCDS DB by GeneID:64092See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 58786.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285670.7 ENSP00000285670.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000285670.7Link to Ensembl Protein Viewer:ENSP00000285670.2Re-query CCDS DB by Nucleotide ID:ENST00000285670Re-query CCDS DB by Protein ID:ENSP00000285670
Original member Current member NCBI NM_001256370.2 NP_001243299.1 Accepted alive Link to Nucleotide Sequence:NM_001256370.2Link to Protein Sequence:NP_001243299.1Re-query CCDS DB by Nucleotide ID:NM_001256370Re-query CCDS DB by Protein ID:NP_001243299Link to BLAST:NP_001243299.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243299.1 441 Q9NSI8-3 441 100% 0 0

Chromosomal Locations for CCDS 58786.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 14485912 14486114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14498442 14498592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14500529 14500735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14510310 14510461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14512444 14512573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14516892 14517041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14521150 14521221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14582136 14582396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGGAGATTAGATTGGATACTCTTTCTGCATCACTGGGTAGATCCAGCACTTTAAATAACTGCAACTTGG
AAGATAAATTAGCTTGGTATGAAGGTGAAGCTTACATGTGGCATCACTGGAAGCCTTTTCCTGAAAACCC
TCTCTGGACATGTCTTGATTTCCAAATAGCACAAGTTGGACCCTGGGACCACTGCTCCTCTTGTATTCGC
CACACACGTCTCAAGTCTTCCTGCTCAGATATGGATCTCCTACATTCATGGCGAAGCAGCAGTTTTGGGA
ATTTCGATCGTTTTCGGAATAATTCTTTATCAAAACCAGATGATTCAACTGAGGCACATGAAGGAGATCC
CACAAATGGAAGTGGAGAACAAAGTAAAACTTCAAATAATGGAGGCGGTTTGGGTAAAAAAATGAGAGCT
ATTTCATGGACAATGAAGAAAAAAGTGGGTAAAAAGTACATCAAAGCCCTTTCTGAGGAAAAGGATGAGG
AAGATGGAGAGAATGCCCACCCATATAGAAACAGTGACCCTGTGATTGGGACCCACACAGAGAAGGTGTC
CCTCAAAGCCAGTGACTCCATGGATAGTCTCTACAGTGGACAGAGCTCATCAAGTGGCATAACAAGCTGT
TCAGATGGTACAAGTAACCGGGACAGCTTTCGACTGGATGACGATGGCCCCTATTCAGGACCATTCTGTG
GCCGTGCCAGAGTGCATACGGATTTCACGCCAAGTCCCTATGACACTGACTCCCTCAAAATCAAGAAAGG
AGACATCATAGACATTATTTGCAAAACACCAATGGGGATGTGGACAGGAATGTTGAACAATAAAGTGGGA
AACTTCAAATTCATTTATGTGGATGTCATCTCAGAAGAGGAAGCAGCCCCCAAGAAAATAAAGGCAAACC
GAAGGAGTAACAGCAAAAAATCCAAGACTCTGCAGGAGTTCCTAGAGAGGATTCATCTGCAGGAATACAC
CTCAACACTTTTGCTCAATGGTTATGAGACTCTAGAAGATTTAAAAGATATAAAAGAGAGTCACCTCATT
GAATTAAATATTGAAAACCCAGATGACAGAAGAAGGTTACTATCAGCTGCTGAAAACTTCCTTGAAGAAG
AAATTATTCAAGAGCAAGAAAATGAACCTGAGCCCCTATCCTTGAGCTCAGACATCTCCTTAAATAAGTC
ACAGTTAGATGACTGCCCAAGGGACTCTGGTTGCTATATCTCATCAGGAAATTCAGATAATGGCAAAGAG
GATCTGGAGTCTGAAAATCTGTCTGACATGGTACATAAGATTATTATCACAGAGCCAAGTGACTGA

Translation (441 aa):
MEIRLDTLSASLGRSSTLNNCNLEDKLAWYEGEAYMWHHWKPFPENPLWTCLDFQIAQVGPWDHCSSCIR
HTRLKSSCSDMDLLHSWRSSSFGNFDRFRNNSLSKPDDSTEAHEGDPTNGSGEQSKTSNNGGGLGKKMRA
ISWTMKKKVGKKYIKALSEEKDEEDGENAHPYRNSDPVIGTHTEKVSLKASDSMDSLYSGQSSSSGITSC
SDGTSNRDSFRLDDDGPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVG
NFKFIYVDVISEEEAAPKKIKANRRSNSKKSKTLQEFLERIHLQEYTSTLLLNGYETLEDLKDIKESHLI
ELNIENPDDRRRLLSAAENFLEEEIIQEQENEPEPLSLSSDISLNKSQLDDCPRDSGCYISSGNSDNGKE
DLESENLSDMVHKIIITEPSD


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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