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Report for CCDS58936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58936.1 Public Homo sapiens 4 GPM6A 24 110 108 CCDS HistoryNCBI Gene:2823Re-query CCDS DB by CCDS ID:58936.1Re-query CCDS DB by GeneID:2823See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58936.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000515090.5 ENSP00000423984.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515090.5Link to Ensembl Protein Viewer:ENSP00000423984.1Re-query CCDS DB by Nucleotide ID:ENST00000515090Re-query CCDS DB by Protein ID:ENSP00000423984
Original member NCBI NM_001261448.1 NP_001248377.1 Updated not alive Link to Nucleotide Sequence:NM_001261448.1Link to Protein Sequence:NP_001248377.1Re-query CCDS DB by Nucleotide ID:NM_001261448Re-query CCDS DB by Protein ID:NP_001248377
Current member NCBI NM_001261448.2 NP_001248377.1 Accepted alive Link to Nucleotide Sequence:NM_001261448.2Link to Protein Sequence:NP_001248377.1Re-query CCDS DB by Nucleotide ID:NM_001261448Re-query CCDS DB by Protein ID:NP_001248377Link to BLAST:NP_001248377.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001248377.1 271 P51674-2 271 100% 0 0

Chromosomal Locations for CCDS 58936.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 175634905 175635057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175640129 175640194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175640753 175640829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175651834 175651987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175673680 175673836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175701575 175701767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 175787336 175787351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGACAGACCTGGAAGGGTGTTTTGAATGCTGTATCAAATGCCTGGGGGGCATTCCCTATGCCTCTCTGA
TTGCCACCATCCTGCTCTATGCGGGTGTTGCCCTGTTCTGTGGCTGCGGTCATGAAGCGCTTTCTGGAAC
TGTCAACATTCTGCAAACCTACTTTGAGATGGCAAGAACTGCTGGAGACACACTGGATGTTTTTACCATG
ATTGACATCTTTAAGTATGTGATCTACGGCATCGCAGCTGCGTTCTTTGTGTATGGCATTTTGCTGATGG
TGGAAGGTTTCTTCACAACTGGGGCCATCAAAGATCTCTATGGGGATTTCAAAATCACCACTTGTGGCAG
ATGTGTGAGCGCTTGGTTCATTATGCTGACATATCTTTTCATGTTGGCCTGGCTGGGAGTCACGGCTTTC
ACCTCACTGCCAGTTTACATGTACTTCAATCTGTGGACCATCTGCCGGAACACCACATTAGTGGAGGGAG
CAAATCTCTGCTTGGACCTTCGTCAGTTTGGAATTGTGACAATTGGAGAGGAAAAGAAAATTTGTACTGT
CTCTGAGAATTTCTTGAGGATGTGCGAATCTACTGAGCTGAACATGACCTTCCACTTGTTTATTGTGGCA
CTTGCTGGAGCTGGGGCAGCAGTCATTGCTATGGTTCACTACCTTATGGTTCTGTCTGCCAACTGGGCCT
ATGTGAAAGACGCCTGCCGGATGCAGAAGTATGAAGACATCAAGTCGAAGGAAGAGCAAGAGCTTCATGA
CATCCACTCTACTCGCTCCAAAGAGCGGCTCAATGCATACACATAA

Translation (271 aa):
MTDLEGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTLDVFTM
IDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIMLTYLFMLAWLGVTAF
TSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKICTVSENFLRMCESTELNMTFHLFIVA
LAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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