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Report for CCDS59274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59274.1 Public Homo sapiens 16 IST1 24 110 108 CCDS HistoryNCBI Gene:9798Re-query CCDS DB by CCDS ID:59274.1Re-query CCDS DB by GeneID:9798See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59274.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538850.5 ENSP00000463711.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538850.5Link to Ensembl Protein Viewer:ENSP00000463711.1Re-query CCDS DB by Nucleotide ID:ENST00000538850Re-query CCDS DB by Protein ID:ENSP00000463711
Original member Current member EBI ENST00000606369.5 ENSP00000475853.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000606369.5Link to Ensembl Protein Viewer:ENSP00000475853.1Re-query CCDS DB by Nucleotide ID:ENST00000606369Re-query CCDS DB by Protein ID:ENSP00000475853
Original member Current member NCBI NM_001270978.2 NP_001257907.1 Accepted alive Link to Nucleotide Sequence:NM_001270978.2Link to Protein Sequence:NP_001257907.1Re-query CCDS DB by Nucleotide ID:NM_001270978Re-query CCDS DB by Protein ID:NP_001257907Link to BLAST:NP_001257907.1
Original member Current member NCBI NM_001270979.1 NP_001257908.1 Accepted alive Link to Nucleotide Sequence:NM_001270979.1Link to Protein Sequence:NP_001257908.1Re-query CCDS DB by Nucleotide ID:NM_001270979Re-query CCDS DB by Protein ID:NP_001257908Link to BLAST:NP_001257908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257907.1 218 P53990-6 218 100% 0 0
NP_001257908.1 218 P53990-6 218 100% 0 0

Chromosomal Locations for CCDS 59274.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 71921346 71921453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71922474 71922680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71923288 71923380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71924769 71924817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71927614 71927813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGCACAAGCTGAGTGTGGAAGCCCCACCCAAAATCCTGGTGGAGAGATACCTGATTGAAATTGCAAAGA
ATTACAACGTACCCTATGAACCTGACTCTGTGGTCATGGCAGAAGCTCCTCCTGGGGTAGAGACAGATCT
TATTGATGTTGGATTCACAGATGATGTGAAGAAAGGAGGCCCTGGAAGAGGAGGGAGTGGTGGCTTCACA
GCACCAGTTGGTGGACCTGATGGAACGGTGCCAATGCCCATGCCCATGCCCATGCCTATGCCATCTGCAA
ATACGCCTTTCTCATATCCACTGCCAAAGGGACCATCAGATTTCAATGGACTGCCAATGGGGACTTATCA
GGCCTTTCCCAATATTCATCCACCTCAGATACCAGCAACTCCCCCATCGTATGAATCTGTAGATGACATT
AATGCTGATAAGAATATCTCTTCTGCACAGATTGTTGGTCCTGGACCCAAGCCAGAAGCCTCTGCAAAGC
TTCCTTCCAGACCTGCAGATAACTATGACAACTTTGTCCTACCAGAGTTGCCATCTGTGCCAGACACACT
ACCAACTGCATCTGCTGGTGCCAGCACCTCAGCATCTGAAGACATTGACTTTGATGATCTTTCCCGGAGG
TTTGAAGAGCTGAAAAAGAAAACATAG

Translation (218 aa):
MHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFT
APVGGPDGTVPMPMPMPMPMPSANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDI
NADKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRR
FEELKKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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