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Report for CCDS5945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5945.1 Public Homo sapiens 7 LMBR1 24 110 108 CCDS HistoryNCBI Gene:64327Re-query CCDS DB by CCDS ID:5945.1Re-query CCDS DB by GeneID:64327See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5945.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000353442.10 ENSP00000326604.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000353442.10Link to Ensembl Protein Viewer:ENSP00000326604.7Re-query CCDS DB by Nucleotide ID:ENST00000353442Re-query CCDS DB by Protein ID:ENSP00000326604
Original member Current member NCBI NM_022458.4 NP_071903.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022458.4Link to Protein Sequence:NP_071903.2Re-query CCDS DB by Nucleotide ID:NM_022458Re-query CCDS DB by Protein ID:NP_071903Link to BLAST:NP_071903.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071903.2 490 Q8WVP7-1 490 100% 0 0

Chromosomal Locations for CCDS 5945.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 156684078 156684163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156688030 156688191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156724112 156724178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156725435 156725525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156725764 156725837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156727930 156728007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156728644 156728720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156734177 156734257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156756393 156756465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156762134 156762198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156763108 156763176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156763669 156763795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156796389 156796492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156826605 156826744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156833753 156833792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156836813 156836885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156892928 156892993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGAAGGGCAGGACGAGGTGTCGGCGCGGGAGCAGCACTTCCACAGCCAAGTGCGGGAGTCCACGATAT
GTTTCCTTCTTTTTGCCATTCTCTACGTTGTTTCCTACTTCATCATCACAAGATACAAGAGAAAATCAGA
TGAACAAGAAGATGAAGATGCCATCGTCAACAGGATTTCGTTGTTTTTGAGCACGTTCACTCTCGCAGTG
TCAGCTGGGGCTGTTTTGCTTTTACCCTTCTCAATCATCAGCAATGAAATCCTGCTTTCTTTTCCTCAGA
ACTACTATATTCAGTGGCTAAATGGCTCCCTGATTCATGGTTTGTGGAATCTTGCTTCCCTTTTTTCCAA
CCTTTGTTTATTTGTATTGATGCCCTTTGCCTTTTTCTTTCTGGAATCAGAAGGCTTTGCTGGCCTGAAA
AAGGGAATCCGAGCCCGCATTTTAGAGACTTTGGTCATGCTTCTTCTTCTTGCGTTACTCATTCTTGGGA
TAGTGTGGGTAGCTTCAGCACTCATTGACAACGATGCCGCAAGCATGGAATCTTTATATGATCTCTGGGA
GTTCTATCTACCCTATTTATATTCCTGTATATCATTGATGGGATGTTTGTTACTTCTCTTGTGTACACCA
GTTGGCCTTTCTCGTATGTTCACAGTGATGGGTCAGTTGCTAGTGAAGCCAACAATTCTTGAAGACCTGG
ATGAACAAATTTATATCATTACCTTAGAGGAAGAAGCACTCCAGAGACGACTAAATGGGCTGTCTTCATC
GGTGGAATACAACATAATGGAGTTGGAACAAGAACTTGAAAATGTAAAGACTCTTAAGACAAAATTAGAG
AGGCGAAAAAAGGCTTCAGCATGGGAAAGAAATTTGGTGTATCCCGCTGTTATGGTTCTCCTTCTTATTG
AGACATCCATCTCGGTCCTCTTGGTGGCTTGTAATATTCTTTGCCTATTGGTTGATGAAACAGCAATGCC
AAAAGGAACAAGGGGGCCTGGAATAGGAAATGCCTCTCTTTCTACGTTTGGTTTTGTGGGAGCTGCGCTT
GAAATCATTTTGATTTTCTATCTTATGGTGTCCTCTGTTGTCGGCTTCTATAGCCTTCGATTTTTTGGAA
ACTTTACTCCCAAGAAAGATGACACAACTATGACAAAGATCATTGGAAATTGTGTGTCCATCTTGGTTTT
GAGCTCTGCTCTGCCTGTGATGTCGAGAACACTGGGAATCACTAGATTTGATCTACTTGGCGACTTTGGA
AGGTTTAATTGGCTGGGAAATTTCTATATTGTATTATCCTACAATTTGCTTTTTGCTATTGTGACAACAT
TGTGTCTGGTCCGAAAATTCACCTCTGCAGTTCGAGAAGAACTTTTCAAGGCCCTAGGGCTTCATAAACT
TCACTTACCAAATACTTCAAGGGATTCAGAAACAGCCAAGCCTTCTGTAAATGGGCATCAGAAAGCACTG
TGA

Translation (490 aa):
MEGQDEVSAREQHFHSQVRESTICFLLFAILYVVSYFIITRYKRKSDEQEDEDAIVNRISLFLSTFTLAV
SAGAVLLLPFSIISNEILLSFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLK
KGIRARILETLVMLLLLALLILGIVWVASALIDNDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTP
VGLSRMFTVMGQLLVKPTILEDLDEQIYIITLEEEALQRRLNGLSSSVEYNIMELEQELENVKTLKTKLE
RRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGNASLSTFGFVGAAL
EIILIFYLMVSSVVGFYSLRFFGNFTPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGITRFDLLGDFG
RFNWLGNFYIVLSYNLLFAIVTTLCLVRKFTSAVREELFKALGLHKLHLPNTSRDSETAKPSVNGHQKAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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