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Report for CCDS6015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6015.1 Public Homo sapiens 8 LZTS1 24 110 108 CCDS HistoryNCBI Gene:11178Re-query CCDS DB by CCDS ID:6015.1Re-query CCDS DB by GeneID:11178See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6015.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265801.6 ENSP00000265801.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000265801.6Link to Ensembl Protein Viewer:ENSP00000265801.6Re-query CCDS DB by Nucleotide ID:ENST00000265801Re-query CCDS DB by Protein ID:ENSP00000265801
Original member Current member EBI ENST00000381569.5 ENSP00000370981.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381569.5Link to Ensembl Protein Viewer:ENSP00000370981.1Re-query CCDS DB by Nucleotide ID:ENST00000381569Re-query CCDS DB by Protein ID:ENSP00000370981
Original member Current member NCBI NM_001362884.2 NP_001349813.1 Accepted alive Link to Nucleotide Sequence:NM_001362884.2Link to Protein Sequence:NP_001349813.1Re-query CCDS DB by Nucleotide ID:NM_001362884Re-query CCDS DB by Protein ID:NP_001349813Link to BLAST:NP_001349813.1
Original member Current member NCBI NM_021020.5 NP_066300.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021020.5Link to Protein Sequence:NP_066300.1Re-query CCDS DB by Nucleotide ID:NM_021020Re-query CCDS DB by Protein ID:NP_066300Link to BLAST:NP_066300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349813.1 596 Q9Y250-1 596 100% 0 0
NP_066300.1 596 Q9Y250-1 596 100% 0 0

Chromosomal Locations for CCDS 6015.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 20249722 20250363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20252782 20253585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20254837 20255181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGGGCAGCGTCAGTAGCCTCATCTCCGGCCACAGCTTCCACAGCAAGCACTGCCGGGCTTCGCAGTACA
AGCTGCGCAAGTCCTCCCACCTCAAGAAGCTCAACCGGTATTCCGACGGGCTGCTGAGGTTTGGCTTCTC
CCAGGACTCCGGTCACGGCAAGTCCAGCTCCAAAATGGGCAAGAGCGAAGACTTCTTCTACATCAAGGTC
AGCCAGAAAGCCCGGGGCTCCCATCACCCAGATTACACGGCACTGTCCAGCGGGGATTTAGGGGGCCAGG
CTGGGGTGGACTTTGACCCGTCCACACCCCCCAAGCTCATGCCCTTCTCCAATCAGCTAGAAATGGGCTC
CGAGAAGGGTGCAGTGAGGCCCACAGCCTTCAAGCCTGTGCTGCCACGGTCAGGAGCCATCCTGCACTCC
TCCCCGGAGAGTGCCAGCCACCAGCTGCACCCCGCCCCTCCAGACAAGCCCAAGGAGCAGGAGCTGAAGC
CTGGCCTGTGCTCTGGGGCGCTGTCAGACTCCGGCCGGAACTCCATGTCCAGCCTGCCCACACACAGCAC
CAGCAGCAGCTACCAGCTGGACCCGCTGGTCACACCCGTGGGACCCACAAGCCGTTTTGGGGGCTCCGCC
CACAACATCACCCAGGGCATCGTCCTCCAGGACAGCAACATGATGAGCCTGAAGGCTCTGTCCTTCTCCG
ACGGAGGTAGCAAGCTGGGCCACTCGAACAAGGCAGACAAGGGCCCCTCGTGTGTCCGCTCCCCCATCTC
CACGGACGAGTGCAGCATCCAGGAGCTGGAGCAGAAGCTGTTGGAGAGGGAGGGCGCCCTCCAGAAGCTG
CAGCGCAGCTTTGAGGAGAAGGAGCTTGCCTCCAGCCTGGCCTACGAGGAGCGGCCGCGGCGCTGCAGGG
ACGAGCTGGAGGGCCCGGAGCCCAAAGGCGGCAACAAGCTCAAGCAGGCCTCGCAGAAGAGCCAGCGCGC
GCAGCAGGTCCTGCACCTGCAGGTACTGCAGCTTCAGCAGGAGAAGCGGCAGCTCCGGCAGGAGCTCGAG
AGCCTCATGAAGGAGCAGGACCTGCTGGAGACCAAGCTCAGGTCCTACGAGAGGGAGAAGACCAGCTTCG
GCCCCGCGCTGGAGGAGACCCAGTGGGAGGTGTGCCAGAAGTCAGGCGAGATCTCCCTCCTGAAGCAGCA
GCTGAAGGAGTCCCAGACGGAGGTGAACGCCAAGGCTAGCGAGATCCTGGGTCTCAAGGCACAGCTGAAG
GACACGCGGGGCAAGCTGGAGGGCCTGGAGCTGAGGACCCAGGACCTGGAGGGCGCCCTGCGCACCAAGG
GCCTGGAGCTGGAGGTCTGTGAGAATGAGCTGCAGCGCAAGAAGAACGAGGCGGAGCTGCTGCGGGAGAA
GGTGAACCTGCTGGAGCAGGAGCTGCAGGAGCTGCGGGCCCAGGCCGCCCTGGCCCGCGACATGGGGCCG
CCCACCTTCCCCGAGGACGTCCCTGCCCTGCAGCGGGAGCTGGAGCGGCTGCGGGCCGAGCTGCGGGAGG
AGCGGCAAGGCCATGACCAGATGTCCTCGGGCTTCCAGCATGAGCGGCTCGTGTGGAAGGAGGAGAAGGA
GAAGGTGATTCAGTACCAGAAACAGCTGCAGCAGAGCTACGTGGCCATGTACCAGCGGAACCAGCGCCTG
GAGAAGGCCCTGCAGCAGCTGGCACGTGGGGACAGCGCCGGGGAGCCCTTGGAGGTTGACCTGGAAGGGG
CTGACATCCCCTACGAGGACATCATAGCCACTGAGATCTGA

Translation (596 aa):
MGSVSSLISGHSFHSKHCRASQYKLRKSSHLKKLNRYSDGLLRFGFSQDSGHGKSSSKMGKSEDFFYIKV
SQKARGSHHPDYTALSSGDLGGQAGVDFDPSTPPKLMPFSNQLEMGSEKGAVRPTAFKPVLPRSGAILHS
SPESASHQLHPAPPDKPKEQELKPGLCSGALSDSGRNSMSSLPTHSTSSSYQLDPLVTPVGPTSRFGGSA
HNITQGIVLQDSNMMSLKALSFSDGGSKLGHSNKADKGPSCVRSPISTDECSIQELEQKLLEREGALQKL
QRSFEEKELASSLAYEERPRRCRDELEGPEPKGGNKLKQASQKSQRAQQVLHLQVLQLQQEKRQLRQELE
SLMKEQDLLETKLRSYEREKTSFGPALEETQWEVCQKSGEISLLKQQLKESQTEVNAKASEILGLKAQLK
DTRGKLEGLELRTQDLEGALRTKGLELEVCENELQRKKNEAELLREKVNLLEQELQELRAQAALARDMGP
PTFPEDVPALQRELERLRAELREERQGHDQMSSGFQHERLVWKEEKEKVIQYQKQLQQSYVAMYQRNQRL
EKALQQLARGDSAGEPLEVDLEGADIPYEDIIATEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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