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Report for CCDS60517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60517.1 Public Homo sapiens 10 RASGEF1A 24 110 108 CCDS HistoryNCBI Gene:221002Re-query CCDS DB by CCDS ID:60517.1Re-query CCDS DB by GeneID:221002See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60517.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374459.5 ENSP00000363583.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374459.5Link to Ensembl Protein Viewer:ENSP00000363583.1Re-query CCDS DB by Nucleotide ID:ENST00000374459Re-query CCDS DB by Protein ID:ENSP00000363583
Original member Current member NCBI NM_001282862.2 NP_001269791.1 Accepted alive Link to Nucleotide Sequence:NM_001282862.2Link to Protein Sequence:NP_001269791.1Re-query CCDS DB by Nucleotide ID:NM_001282862Re-query CCDS DB by Protein ID:NP_001269791Link to BLAST:NP_001269791.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269791.1 489 Q8N9B8-2 489 100% 0 0

Chromosomal Locations for CCDS 60517.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 43196244 43196268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43196476 43196548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43196976 43197099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43198004 43198195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43198933 43199012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43199092 43199194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43199676 43199768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43200182 43200256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43200667 43200888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43201808 43201945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43203298 43203420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43205919 43206122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43229637 43229654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGTTCCTGGAGCCCCAGGAAACTATGCCCCAGACGTCCGTTGTCTTCTCCAGCATCCTTGGGCCCAGCT
GTAGCGGACAGGTGCAGCCTGGCATGGGGGAGCGTGGAGGCGGGGCCGGTGGCGGCTCCGGGGACCTCAT
CTTCCAAGATGGACACCTCATCTCTGGGTCCCTGGAGGCCCTGATGGAGCACCTTGTTCCCACGGTGGAC
TATTACCCCGATAGGACGTACATCTTCACCTTTCTCCTGAGCTCCCGGGTCTTTATGCCCCCTCATGACC
TGCTGGCCCGCGTGGGGCAGATCTGCGTGGAGCAGAAGCAGCAGCTGGAAGCCGGGCCTGAAAAGGCCAA
GCTGAAGTCTTTCTCAGCCAAGATCGTGCAGCTCCTGAAGGAGTGGACCGAGGCCTTCCCCTATGACTTC
CAGGATGAGAAGGCCATGGCCGAGCTGAAAGCCATCACACACCGTGTCACCCAGTGTGATGAGGAGAATG
GCACAGTGAAGAAGGCCATTGCCCAGATGACACAGAGCCTGTTGCTGTCCTTGGCTGCCCGGAGCCAGCT
CCAGGAACTGCGAGAGAAGCTCCGGCCACCGGCTGTAGACAAGGGGCCCATCCTCAAGACCAAGCCACCA
GCCGCCCAGAAGGACATCCTGGGCGTGTGCTGCGACCCCCTGGTGCTGGCCCAGCAGCTGACTCACATTG
AGCTGGACAGGGTCAGCAGCATTTACCCTGAGGACTTGATGCAGATCGTCAGCCACATGGACTCCTTGGA
CAACCACAGGTGCCGAGGGGACCTGACCAAGACCTACAGCCTGGAGGCCTATGACAACTGGTTCAACTGC
CTGAGCATGCTGGTGGCCACTGAGGTGTGCCGGGTGGTGAAGAAGAAACACCGGACCCGCATGTTGGAGT
TCTTCATTGATGTGGCCCGGGAGTGCTTCAACATCGGGAACTTCAACTCCATGATGGCCATCATCTCTGG
CATGAACCTCAGTCCTGTGGCAAGGCTGAAGAAAACTTGGTCCAAGGTCAAGACAGCCAAGTTTGATGTC
TTGGAGCATCACATGGACCCGTCCAGCAACTTCTGCAACTACCGTACAGCCCTGCAGGGGGCCACGCAGA
GGTCCCAGATGGCCAACAGCAGCCGTGAAAAGATCGTCATCCCTGTGTTCAACCTCTTCGTTAAGGACAT
CTACTTCCTGCACAAAATCCATACCAACCACCTGCCCAACGGGCACATTAACTTTAAGAAATTCTGGGAG
ATCTCCAGACAGATCCATGAGTTCATGACATGGACACAGGTAGAGTGTCCTTTCGAGAAGGACAAGAAGA
TTCAGAGTTACCTGCTCACGGCGCCCATCTACAGCGAGGAAGCTCTCTTCGTCGCCTCCTTTGAAAGTGA
GGGTCCCGAGAACCACATGGAAAAAGACAGCTGGAAGACCCTCAGGACCACCCTTCTGAACAGAGCCTGA

Translation (489 aa):
MFLEPQETMPQTSVVFSSILGPSCSGQVQPGMGERGGGAGGGSGDLIFQDGHLISGSLEALMEHLVPTVD
YYPDRTYIFTFLLSSRVFMPPHDLLARVGQICVEQKQQLEAGPEKAKLKSFSAKIVQLLKEWTEAFPYDF
QDEKAMAELKAITHRVTQCDEENGTVKKAIAQMTQSLLLSLAARSQLQELREKLRPPAVDKGPILKTKPP
AAQKDILGVCCDPLVLAQQLTHIELDRVSSIYPEDLMQIVSHMDSLDNHRCRGDLTKTYSLEAYDNWFNC
LSMLVATEVCRVVKKKHRTRMLEFFIDVARECFNIGNFNSMMAIISGMNLSPVARLKKTWSKVKTAKFDV
LEHHMDPSSNFCNYRTALQGATQRSQMANSSREKIVIPVFNLFVKDIYFLHKIHTNHLPNGHINFKKFWE
ISRQIHEFMTWTQVECPFEKDKKIQSYLLTAPIYSEEALFVASFESEGPENHMEKDSWKTLRTTLLNRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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