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Report for CCDS6055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6055.1 Public Homo sapiens 8 STMN4 24 110 108 CCDS HistoryNCBI Gene:81551Re-query CCDS DB by CCDS ID:6055.1Re-query CCDS DB by GeneID:81551See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6055.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350889.9 ENSP00000342538.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000350889.9Link to Ensembl Protein Viewer:ENSP00000342538.4Re-query CCDS DB by Nucleotide ID:ENST00000350889Re-query CCDS DB by Protein ID:ENSP00000342538
Original member Current member NCBI NM_030795.4 NP_110422.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030795.4Link to Protein Sequence:NP_110422.2Re-query CCDS DB by Nucleotide ID:NM_030795Re-query CCDS DB by Protein ID:NP_110422Link to BLAST:NP_110422.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110422.2 216 Q9H169-2 216 100% 0 0

Chromosomal Locations for CCDS 6055.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27236846 27236905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27239971 27240162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27241054 27241262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27241677 27241757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27242397 27242492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27243711 27243723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGACCCTTGCTGCCTACAAAGAGAAGATGAAGGAGCTCCCGCTGGTGTCCTTGTTCTGCTCCTGCTTCC
TGGCCGATCCCCTGAATAAGTCGTCCTACAAATATGAAGGCTGGTGTGGGAGACAGTGTAGGAGGAAGGA
TGAAAGCCAGCGGAAAGACAGTGCTGACTGGAGAGAAAGAAGAGCTCAGGCAGACACGGTGGACCTGAAT
TGGTGCGTCATTTCCGACATGGAAGTCATCGAGCTGAACAAATGCACCTCGGGCCAATCCTTTGAAGTCA
TCCTGAAGCCACCCTCCTTTGATGGGGTTCCCGAGTTCAACGCCTCCCTGCCAAGGCGGCGAGACCCATC
CCTGGAAGAGATCCAGAAGAAACTAGAAGCGGCTGAGGAGCGAAGGAAGTACCAGGAAGCGGAGCTCCTG
AAACACCTAGCAGAGAAACGGGAACATGAGAGAGAGGTGATCCAAAAGGCCATTGAGGAAAACAACAACT
TCATCAAGATGGCTAAGGAAAAACTGGCCCAGAAGATGGAATCCAACAAGGAGAACAGGGAGGCCCACCT
CGCCGCCATGTTGGAACGGCTGCAAGAGAAGGACAAGCACGCCGAGGAGGTGCGGAAAAACAAGGAGCTG
AAGGAAGAGGCCTCCAGGTAA

Translation (216 aa):
MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRKDSADWRERRAQADTVDLN
WCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELL
KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKEL
KEEASR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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