NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6090.1 Public Homo sapiens 8 TTI2 24 110 108 CCDS HistoryNCBI Gene:80185Re-query CCDS DB by CCDS ID:6090.1Re-query CCDS DB by GeneID:80185See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6090.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360742.9 ENSP00000353971.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360742.9Link to Ensembl Protein Viewer:ENSP00000353971.5Re-query CCDS DB by Nucleotide ID:ENST00000360742Re-query CCDS DB by Protein ID:ENSP00000353971
Original member Current member EBI ENST00000431156.7 ENSP00000411169.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000431156.7Link to Ensembl Protein Viewer:ENSP00000411169.3Re-query CCDS DB by Nucleotide ID:ENST00000431156Re-query CCDS DB by Protein ID:ENSP00000411169
Original member Current member EBI ENST00000613904.1 ENSP00000478396.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613904.1Link to Ensembl Protein Viewer:ENSP00000478396.1Re-query CCDS DB by Nucleotide ID:ENST00000613904Re-query CCDS DB by Protein ID:ENSP00000478396
Original member Current member NCBI NM_001102401.4 NP_001095871.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001102401.4Link to Protein Sequence:NP_001095871.1Re-query CCDS DB by Nucleotide ID:NM_001102401Re-query CCDS DB by Protein ID:NP_001095871Link to BLAST:NP_001095871.1
Original member Current member NCBI NM_001265581.2 NP_001252510.1 Accepted alive Link to Nucleotide Sequence:NM_001265581.2Link to Protein Sequence:NP_001252510.1Re-query CCDS DB by Nucleotide ID:NM_001265581Re-query CCDS DB by Protein ID:NP_001252510Link to BLAST:NP_001252510.1
Original member Current member NCBI NM_025115.5 NP_079391.2 Accepted alive Link to Nucleotide Sequence:NM_025115.5Link to Protein Sequence:NP_079391.2Re-query CCDS DB by Nucleotide ID:NM_025115Re-query CCDS DB by Protein ID:NP_079391Link to BLAST:NP_079391.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095871.1 508 Q6NXR4 508 100% 0 0
NP_001252510.1 508 Q6NXR4 508 100% 0 0
NP_079391.2 508 Q6NXR4 508 100% 0 0

Chromosomal Locations for CCDS 6090.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 33499173 33499277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33500328 33500490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33503429 33503572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33503748 33503935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33507229 33507321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33509746 33509932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33511967 33512613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGGAGCTTGACAGCGCTCTGGAAGCCCCATCGCAGGAAGACTCTAATTTGTCCGAGGAGTTGTCTCACT
CCGCCTTTGGACAGGCCTTCTCCAAGATTTTACACTGTCTTGCCCGCCCGGAGGCACGACGAGGCAATGT
AAAAGATGCAGTTCTTAAAGACCTCGGTGATCTAATAGAAGCCACAGAATTTGATAGGTTATTTGAGGGG
ACTGGTGCACGGCTCCGCGGAATGCCGGAGACACTGGGGCAGGTAGCAAAAGCCCTGGAGAAGTATGCAG
CCCCCTCCAAGGAGGAGGAAGGTGGAGGTGATGGGCACTCCGAAGCGGCCGAGAAAGCAGCCCAAGTTGG
GTTACTGTTTCTTAAACTGTTAGGGAAAGTTGAGACTGCTAAGAATTCCCTGGTCGGCCCTGCATGGCAG
ACGGGCCTGCATCACTTGGCAGGACCCGTTTATATTTTTGCCATCACACACAGCTTGGAGCAACCATGGA
CCACTCCGAGATCTCGGGAAGTTGCTAGGGAGGTGCTCACCTCACTGCTTCAAGTTACTGAATGCGGTTC
TGTGGCAGGATTCCTACATGGAGAAAATGAAGATGAGAAAGGGAGACTTTCGGTGATACTAGGGCTTCTC
AAACCCGACTTGTATAAGGAATCCTGGAAGAATAACCCTGCCATCAAACATGTTTTCTCATGGACTCTGC
AACAGGTCACTCGGCCCTGGCTGAGCCAGCATCTGGAAAGGGTACTTCCCGCATCATTGGTCATTTCAGA
TGACTATCAGACTGAGAACAAAATCCTGGGTGTACACTGTCTCCATCACATTGTGCTTAATGTGCCAGCT
GCTGATTTGCTCCAGTATAACAGAGCCCAGGTCCTATACCATGCCATTTCCAACCACCTGTACACACCAG
AGCACCACCTCATTCAGGCTGTGCTCCTGTGTCTGCTGGATTTATTCCCCATCCTGGAGAAAACCCTGCA
CTGGAAAGGAGATGGAGCTCGACCCACCACCCATTGTGATGAGGTCCTGCGGCTGATCCTGACCCACATG
GAGCCAGAGCACCGCCTTCTTTTACGCAGGACCTACGCAAGAAACCTGCCGGCTTTCGTGAACAGGTTGG
GGATCCTAACTGTCCGGCACTTAAAGAGGCTGGAGAGAGTCATCATTGGTTATCTGGAGGTTTATGATGG
ACCTGAGGAGGAAGCTAGACTGAAGATATTGGAAACCCTAAAACTTCTCATGCAACATACTTGGCCCAGA
GTTTCCTGCAGACTTGTGGTCTTACTGAAGGCCCTCTTGAAACTGATTTGTGATGTAGCAAGGGATCCAA
ACCTTACACCTGAGTCTGTTAAGAGCGCCCTGCTACAGGAGGCCACAGACTGCCTGATTCTCCTGGACCG
CTGTTCTCAAGGACGGGTAAAGGGTCTCCTGGCCAAAATTCCCCAAAGCTGTGAAGACAGAAAAGTGGTG
AACTATATCAGAAAAGTGCAGCAGGTTTCTGAAGGCGCACCCTACAATGGAACTTAA

Translation (508 aa):
MELDSALEAPSQEDSNLSEELSHSAFGQAFSKILHCLARPEARRGNVKDAVLKDLGDLIEATEFDRLFEG
TGARLRGMPETLGQVAKALEKYAAPSKEEEGGGDGHSEAAEKAAQVGLLFLKLLGKVETAKNSLVGPAWQ
TGLHHLAGPVYIFAITHSLEQPWTTPRSREVAREVLTSLLQVTECGSVAGFLHGENEDEKGRLSVILGLL
KPDLYKESWKNNPAIKHVFSWTLQQVTRPWLSQHLERVLPASLVISDDYQTENKILGVHCLHHIVLNVPA
ADLLQYNRAQVLYHAISNHLYTPEHHLIQAVLLCLLDLFPILEKTLHWKGDGARPTTHCDEVLRLILTHM
EPEHRLLLRRTYARNLPAFVNRLGILTVRHLKRLERVIIGYLEVYDGPEEEARLKILETLKLLMQHTWPR
VSCRLVVLLKALLKLICDVARDPNLTPESVKSALLQEATDCLILLDRCSQGRVKGLLAKIPQSCEDRKVV
NYIRKVQQVSEGAPYNGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH