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Report for CCDS6116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6116.1 Public Homo sapiens 8 GINS4 24 110 108 CCDS HistoryNCBI Gene:84296Re-query CCDS DB by CCDS ID:6116.1Re-query CCDS DB by GeneID:84296See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6116.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276533.4 ENSP00000276533.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000276533.4Link to Ensembl Protein Viewer:ENSP00000276533.3Re-query CCDS DB by Nucleotide ID:ENST00000276533Re-query CCDS DB by Protein ID:ENSP00000276533
Original member Current member EBI ENST00000518671.5 ENSP00000428754.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518671.5Link to Ensembl Protein Viewer:ENSP00000428754.1Re-query CCDS DB by Nucleotide ID:ENST00000518671Re-query CCDS DB by Protein ID:ENSP00000428754
Original member Current member NCBI NM_032336.3 NP_115712.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032336.3Link to Protein Sequence:NP_115712.1Re-query CCDS DB by Nucleotide ID:NM_032336Re-query CCDS DB by Protein ID:NP_115712Link to BLAST:NP_115712.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115712.1 223 Q9BRT9-1 223 100% 0 0

Chromosomal Locations for CCDS 6116.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 41530203 41530298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41536360 41536446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41537180 41537293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41539678 41539775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41539916 41540004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41541809 41541899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41541991 41542087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGACCGAAGAAGTGGATTTCCTGGGACAGGACTCTGATGGGGGTAGTGAGGAAGTGGTCCTAACTCCTG
CAGAGCTCATTGAAAGATTGGAGCAGGCCTGGATGAATGAAAAGTTTGCCCCTGAGCTGCTGGAGAGCAA
GCCTGAGATTGTAGAATGTGTCATGGAACAGCTGGAGCACATGGAAGAAAATCTCAGGAGAGCCAAAAGG
GAGGACCTGAAGGTCAGCATCCACCAAATGGAGATGGAGAGGATCCGCTACGTCCTCAGCAGCTACTTGC
GGTGTCGCCTCATGAAGATAGAGAAGTTTTTCCCTCATGTCCTTGAGAAGGAAAAAACACGTCCTGAGGG
GGAGCCTTCCAGCCTCTCGCCGGAAGAGTTGGCCTTTGCCAGAGAGTTCATGGCGAACACAGAGTCCTAT
CTGAAAAATGTCGCCTTGAAGCACATGCCCCCTAACTTACAGAAGGTGGACCTCTTTCGGGCAGTTCCCA
AACCAGATCTAGATTCTTACGTGTTTCTGAGAGTGAGAGAACGACAAGAAAACATACTGGTAGAACCAGA
CACAGATGAGCAGAGGGACTACGTGATTGACCTGGAGAAGGGCTCACAGCACTTGATCCGATACAAAACC
ATTGCACCTCTGGTTGCATCTGGAGCTGTCCAGCTAATTTAA

Translation (223 aa):
MTEEVDFLGQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKR
EDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESY
LKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKT
IAPLVASGAVQLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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