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Report for CCDS61311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61311.1 Public Homo sapiens 13 SUPT20H 24 110 108 CCDS HistoryNCBI Gene:55578Re-query CCDS DB by CCDS ID:61311.1Re-query CCDS DB by GeneID:55578See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61311.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000475892.5 ENSP00000417510.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000475892.5Link to Ensembl Protein Viewer:ENSP00000417510.1Re-query CCDS DB by Nucleotide ID:ENST00000475892Re-query CCDS DB by Protein ID:ENSP00000417510
Original member Current member NCBI NM_001278480.2 NP_001265409.1 Accepted alive Link to Nucleotide Sequence:NM_001278480.2Link to Protein Sequence:NP_001265409.1Re-query CCDS DB by Nucleotide ID:NM_001278480Re-query CCDS DB by Protein ID:NP_001265409Link to BLAST:NP_001265409.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265409.1 811 Q8NEM7-3 811 100% 0 0

Chromosomal Locations for CCDS 61311.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 37009709 37009809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37012192 37012297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37017245 37017364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37019342 37019397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37021448 37021602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37022011 37022317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37024035 37024193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37024340 37024442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37025320 37025437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37026204 37026236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37026790 37026816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37028148 37028305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37029765 37029836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37031567 37031623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37031739 37031895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37033449 37033588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37040405 37040458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37040576 37040692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37044078 37044181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37045247 37045373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37047535 37047601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37047878 37047936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37048564 37048599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37051488 37051490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2436 nt):
ATGCAACAAGCTTTAGAACTAGCTTTGGATCGTGCAGAGTATGTCATTGAAAGTGCCCGACAGAGACCTC
CTAAAAGGAAATACCTATCAAGTGGAAGAAAATCTGTATTTCAAAAACTTTATGACTTGTATATTGAAGA
ATGTGAAAAAGAACCTGAAGTTAAGAAATTAAGAAGAAATGTGAACTTGTTAGAGAAGCTTGTTATGCAA
GAGACTTTGTCATGTTTAGTGGTCAATCTATACCCAGGAAATGAGGGATATTCTCTGATGCTCAGGGGAA
AAAACGGATCAGATTCCGAGACCATTCGACTGCCCTATGAAGAAGGAGAGTTGCTTGAATATTTGGATGC
AGAAGAATTACCTCCTATTTTGGTTGATCTCCTAGAAAAATCTCAGGTTAATATTTTTCATTGCGGATGT
GTCATAGCAGAAATACGTGACTACAGGCAGTCCAGTAACATGAAATCTCCTGGTTACCAAAGTCGGCACA
TTCTCTTACGTCCAACAATGCAGACTTTAATTTGTGATGTACATTCAATAACAAGTGATAACCACAAATG
GACCCAGGAAGACAAACTTTTGCTTGAGAGCCAGCTCATCCTAGCTACAGCTGAACCACTCTGTCTTGAT
CCTTCTATAGCAGTCACCTGCACTGCAAACAGACTGCTCTATAACAAGCAAAAGATGAACACTCGCCCAA
TGAAACGGTGTTTCAAGAGGTATTCCAGATCCTCTCTGAATCGGCAGCAAGATCTATCTCATTGTCCACC
TCCTCCTCAGCTGAGGTTACTTGATTTCTTACAAAAAAGAAAGGAAAGAAAAGCAGGTCAGCATTATGAC
CTCAAAATTTCTAAGGCAGGAAATTGTGTAGATATGTGGAAACGGAGTCCCTGTAATTTGGCCATACCTT
CTGAAGTAGATGTGGAGAAATATGCTAAAGTGGAAAAGTCTATCAAATCTGATGACTCACAGCCAACAGT
CTGGCCAGCCCATGATGTAAAAGATGATTATGTATTTGAATGTGAAGCTGGTACTCAGTATCAGAAAACA
AAGCTGACCATCTTGCAGTCGCTTGGAGATCCACTTTACTATGGTAAAATACAGCCATGTAAAGCAGATG
AAGAAAGTGACAGCCAGATGTCTCCATCACACTCGTCCACAGATGATCATTCAAATTGGTTCATTATTGG
ATCAAAGACCGATGCTGAGAGGGTAGTCAATCAGTACCAAGAATTAGTCCAGAATGAAGCCAAATGTCCG
GTCAAGATGTCACACAGCTCCAGTGGCTCAGCCAGTCTGAGTCAGGTTTCTCCAGGGAAAGAAACAGATC
AAACTGAAACCGTGTCAGTTCAGTCTTCGGTATTGGGGAAGGGTGTAAAACATCGACCCCCACCAATCAA
ACTTCCCTCAAGCTCAGGAAATAGTTCCTCAGGTAACTATTTTACACCACAACAGACAAGCAGCTTTCTC
AAATCTCCAACTCCTCCTCCTTCTTCTAAGCCATCAAGTATTCCTCGGAAATCATCTGTGGATCTCAATC
AAGTTAGCATGCTTTCTCCAGCTGCCCTATCACCTGCCAGCTCATCACAAAGATCTGGAACTCCTAAGCC
ATCTACTCCTACACCAACCCCTTCATCGACCCCACACCCTCCTGATGCTCAGAGCTCAACTCCTAGTACC
CCTTCAGCCACCCCTACTCCCCAAGATTCAGGCTTCACCCCTCAGCCCACTTTGTTAACTCAGTTTGCTC
AGCAGCAAAGGTCTCTGAGCCAGGCAATGCCTGTAACAACCATTCCTCTTTCCACCATGGTAACATCTAT
AACTCCAGGAACCACGGCCACCCAGGTCATGGCAAACTCTGCTGGACTTAACTTCATCAATGTAGTGGGC
TCTGTTTGTGGGGCCCAGGCTTTGATGAGTGGTTCAAACCCCATGCTGGGCTGTAACACTGGTGCCATAA
CTCCTGCAGGAATAAACCTGAGCGGCCTTCTACCCTCAGGAGGTCTGCTACCAAATGCACTGCCCAGTGC
AATGCAGGCAGCTTCTCAAGCAGGTGTTCCATTTGGTTTAAAAAATACTTCAAGTCTCAGGCCCTTAAAT
CTACTCCAGCTTCCAGGTGGTTCACTTATTTTTAACACTCTGCAGCAGCAGCAACAGCAGCTCTCCCAGT
TTACACCACAACAACCTCAGCAGCCCACAACTTGTAGTCCTCAACAGCCAGGGGAGCAGGGTTCTGAGCA
AGGTTCAACCAGTCAAGAACAGGCCTTATCTGCTCAGCAAGCTGCTGTTATTAACCTTACTGGAGTAGGA
AGTTTTATGCAGTCACAGGCAGCTGCAGTTGCGATTCTTGCAGCATCAAATGGCTATGGCAGCAGCAGCA
GCACAAACAGCTCAGCTACATCATCATCGGCATACAGGCAGCCAGTCAAAAAGTAA

Translation (811 aa):
MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQ
ETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGC
VIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLD
PSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYD
LKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKT
KLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCP
VKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNYFTPQQTSSFL
KSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQRSGTPKPSTPTPTPSSTPHPPDAQSSTPST
PSATPTPQDSGFTPQPTLLTQFAQQQRSLSQAMPVTTIPLSTMVTSITPGTTATQVMANSAGLNFINVVG
SVCGAQALMSGSNPMLGCNTGAITPAGINLSGLLPSGGLLPNALPSAMQAASQAGVPFGLKNTSSLRPLN
LLQLPGGSLIFNTLQQQQQQLSQFTPQQPQQPTTCSPQQPGEQGSEQGSTSQEQALSAQQAAVINLTGVG
SFMQSQAAAVAILAASNGYGSSSSTNSSATSSSAYRQPVKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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