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Report for CCDS62390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62390.1 Public Homo sapiens 18 CEP76 24 110 108 CCDS HistoryNCBI Gene:79959Re-query CCDS DB by CCDS ID:62390.1Re-query CCDS DB by GeneID:79959See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62390.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000423709.6 ENSP00000403074.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423709.6Link to Ensembl Protein Viewer:ENSP00000403074.1Re-query CCDS DB by Nucleotide ID:ENST00000423709Re-query CCDS DB by Protein ID:ENSP00000403074
Original member Current member NCBI NM_001271989.2 NP_001258918.1 Accepted alive Link to Nucleotide Sequence:NM_001271989.2Link to Protein Sequence:NP_001258918.1Re-query CCDS DB by Nucleotide ID:NM_001271989Re-query CCDS DB by Protein ID:NP_001258918Link to BLAST:NP_001258918.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258918.1 584 Q8TAP6-2 584 100% 0 0

Chromosomal Locations for CCDS 62390.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12673365 12673503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12674536 12674753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12678109 12678442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12680662 12680828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12686262 12686450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12691359 12691487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12695254 12695351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12697223 12697408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12699830 12699905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12700958 12701113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12702486 12702548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGTCGCTGCCTCCGGAGAAAGCCTCCGAGCTGAAGCAGCTCATCCACCAGCAGCTGAGCAAGATGGATG
TCCATGGTAGAATAAGAGAAATCCTTGCTGAGACTATACGGGAAGAATTGGCACCTGATCAACAGCATTT
ATCAACAGAAGATTTGATCAAAGCCCTTAGACGTCGAGGAATCATTGACGATGTGATGAAAGAACTTAAT
TTTGTTACTGACAGTGTTGAGCAAGAACTCCCTTCCTCTCCAAAACAACCTATTTGTTTTGATAGACAAT
CGACATTAAAAAAAAGTGATGGAACTAGAATGGCTGATTCAACAACAATGTTATCAATAAGTGATCCAAT
TCATATGGTGCTAATCAAAACAGACATATTTGGTGAGACGACTTTAGTAGCATCATATTTTCTGGAATGG
CGATCGGTTTTGGGCTCAGAAAATGGAGTGACCAGTCTGACTGTGGAACTTATGGGTGTAGGCACAGAAT
CAAAAGTTTCTGTGGGAATTTTAAATATAAAACTTGAAATGTATCCACCACTCAATCAAACGTTATCTCA
AGAAGTAGTGAACACACAGCTTGCTTTGGAACGTCAGAAAACTGCAGAGAAAGAGCGATTATTTCTTGTA
TATGCTAAGCAGTGGTGGAGAGAATATTTGCAAATTCGACCCTCACACAACTCACGACTGGTTAAGATTT
TTGCACAGGATGAAAATGGGATAAATAGACCAGTCTGTTCCTATGTTAAACCACTTCGAGCTGGACGGCT
TCTTGATACTCCAAGGCAAGCAGCAAGATTTGTTAATGTCCTTGGTTATGAACGAGCCCCTGTTATTGGA
GGAGGAGGTAAACAGGAGCAGTGGTGCACTCTGCTGGCCTTTCTCTGTAGAAACAAGGGTGACTGTGAAG
ATCACGCTAACCTTCTGTGCAGCCTTCTTCTTGGATATGGATTAGAAGCCTTTGTTTGTGTTGGGACCAA
GGCAAAAGGAGTACCTCATGCATGGGTTATGACTTGTGGAACTGATGGGGCCATCACTTTTTGGGAGAGT
TTAACAGGACACAGGTACATCCATAAACCTACCAATCCTGATGAACCTCCAGTTGCTGAACAGCCCAAAC
CACTGTACCCATATCGAACAATTGGTTGTGTTTTCAACCATCAGATGTTCCTGGGAAATTGTCAACCCTC
TGATGCAGTAGAAACCTGTGTATTTGATTTGAACGATGAATCCAAATGGAAACCCATGAGTGAGGAAGCA
ATTAAATCTGTGTGTGCTCCTGGAGCTACAACATCCCTTCCTCCCTTTCCACCTCTGTGTGCATCCACAA
TTGACGCGTCAGTAACAAGTAATGAAATTGAAATGCAGCTGAGGCTCCTGGTGTCAGAACACAGGAAGGA
TCTTGGCCTCACTACTGTTTGGGAAGACCAGCTCTCCTACCTTTTATCACCAGCTTTGGCTTCTTATGAA
TTTGAGCGTACAACAAGTATATCAGCAGGCAATGAAGAATTTCAAGATGCCATAAGAAGGGCTGTACCTG
ATGGTCACACATTTAAAGGGTTCCCAATACATTTTGTGTATAGAAATGCAAGACGTGCATTTGCCACATG
TCTTCGATCTCCTTTCTGTGAAGAAATAATCTGTTGCCGTGGAGACCAAGTGCGACTGGCAGTTCGTGTC
CGAGTATTTACTTACCCTGAATCTGCATGTGCTGTTTGGATCATGTTTGCTTGTAAATATCGCTCGGTAT
TATAG

Translation (584 aa):
MSLPPEKASELKQLIHQQLSKMDVHGRIREILAETIREELAPDQQHLSTEDLIKALRRRGIIDDVMKELN
FVTDSVEQELPSSPKQPICFDRQSTLKKSDGTRMADSTTMLSISDPIHMVLIKTDIFGETTLVASYFLEW
RSVLGSENGVTSLTVELMGVGTESKVSVGILNIKLEMYPPLNQTLSQEVVNTQLALERQKTAEKERLFLV
YAKQWWREYLQIRPSHNSRLVKIFAQDENGINRPVCSYVKPLRAGRLLDTPRQAARFVNVLGYERAPVIG
GGGKQEQWCTLLAFLCRNKGDCEDHANLLCSLLLGYGLEAFVCVGTKAKGVPHAWVMTCGTDGAITFWES
LTGHRYIHKPTNPDEPPVAEQPKPLYPYRTIGCVFNHQMFLGNCQPSDAVETCVFDLNDESKWKPMSEEA
IKSVCAPGATTSLPPFPPLCASTIDASVTSNEIEMQLRLLVSEHRKDLGLTTVWEDQLSYLLSPALASYE
FERTTSISAGNEEFQDAIRRAVPDGHTFKGFPIHFVYRNARRAFATCLRSPFCEEIICCRGDQVRLAVRV
RVFTYPESACAVWIMFACKYRSVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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