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Report for CCDS6279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6279.1 Public Homo sapiens 8 KCNS2 24 110 108 CCDS HistoryNCBI Gene:3788Re-query CCDS DB by CCDS ID:6279.1Re-query CCDS DB by GeneID:3788See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287042.5 ENSP00000287042.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287042.5Link to Ensembl Protein Viewer:ENSP00000287042.4Re-query CCDS DB by Nucleotide ID:ENST00000287042Re-query CCDS DB by Protein ID:ENSP00000287042
Original member Current member EBI ENST00000521839.1 ENSP00000430712.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521839.1Link to Ensembl Protein Viewer:ENSP00000430712.1Re-query CCDS DB by Nucleotide ID:ENST00000521839Re-query CCDS DB by Protein ID:ENSP00000430712
Original member Current member NCBI NM_020697.4 NP_065748.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020697.4Link to Protein Sequence:NP_065748.1Re-query CCDS DB by Nucleotide ID:NM_020697Re-query CCDS DB by Protein ID:NP_065748Link to BLAST:NP_065748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065748.1 477 Q9ULS6 477 100% 0 0

Chromosomal Locations for CCDS 6279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 98427980 98429413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGACCGGCCAGAGCCTGTGGGACGTGTCGGAGGCTAACGTCGAGGACGGGGAGATCCGCATCAATGTGG
GCGGCTTCAAGAGGAGGCTGCGCTCGCACACGCTGCTGCGCTTCCCCGAGACGCGCCTGGGCCGCTTGCT
GCTCTGCCACTCGCGCGAGGCCATTCTGGAGCTCTGCGATGACTACGACGACGTCCAGCGGGAGTTCTAC
TTCGACCGCAACCCTGAGCTCTTCCCCTACGTGCTGCATTTCTATCACACCGGCAAGCTTCACGTCATGG
CTGAGCTATGTGTCTTCTCCTTCAGCCAGGAGATCGAGTACTGGGGCATCAACGAGTTCTTCATTGACTC
CTGCTGCAGCTACAGCTACCATGGCCGCAAAGTAGAGCCCGAGCAGGAGAAGTGGGACGAGCAGAGTGAC
CAGGAGAGCACCACGTCTTCCTTCGATGAGATCCTTGCCTTCTACAACGACGCCTCCAAGTTCGATGGGC
AGCCCCTCGGCAACTTCCGCAGGCAGCTGTGGCTGGCGCTGGACAACCCCGGCTACTCAGTGCTGAGCAG
GGTCTTCAGCATCCTGTCCATCCTGGTGGTGATGGGGTCCATCATCACCATGTGCCTCAATAGCCTGCCC
GATTTCCAAATCCCTGACAGCCAGGGCAACCCTGGCGAGGACCCTAGGTTCGAAATCGTGGAGCACTTTG
GCATTGCCTGGTTCACATTTGAGCTGGTGGCCAGGTTTGCTGTGGCCCCTGACTTCCTCAAGTTCTTCAA
GAATGCCCTAAACCTTATTGACCTCATGTCCATCGTCCCCTTTTACATCACTCTGGTGGTGAACCTGGTG
GTGGAGAGCACACCTACTTTAGCCAACTTGGGCAGGGTGGCCCAGGTCCTGAGGCTGATGCGGATCTTCC
GCATCTTAAAGCTGGCCAGGCACTCCACTGGCCTCCGCTCCCTGGGGGCCACTTTGAAATACAGCTACAA
AGAAGTAGGGCTGCTCTTGCTCTACCTCTCCGTGGGGATTTCCATCTTCTCCGTGGTGGCCTACACCATT
GAAAAGGAGGAGAACGAGGGCCTGGCCACCATCCCTGCCTGCTGGTGGTGGGCTACCGTCAGTATGACCA
CAGTGGGGTACGGGGATGTGGTCCCAGGGACCACGGCAGGAAAGCTGACTGCCTCTGCCTGCATCTTGGC
AGGCATCCTCGTGGTGGTCCTGCCCATCACCTTGATCTTCAATAAGTTCTCCCACTTTTACCGGCGCCAA
AAGCAACTTGAGAGTGCCATGCGCAGCTGTGACTTTGGAGATGGAATGAAGGAGGTCCCTTCGGTCAATT
TAAGGGACTATTATGCCCATAAAGTTAAATCCCTTATGGCAAGCCTGACGAACATGAGCAGGAGCTCACC
AAGTGAACTCAGTTTAAATGATTCCCTACGTTAG

Translation (477 aa):
MTGQSLWDVSEANVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLLCHSREAILELCDDYDDVQREFY
FDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYWGINEFFIDSCCSYSYHGRKVEPEQEKWDEQSD
QESTTSSFDEILAFYNDASKFDGQPLGNFRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLP
DFQIPDSQGNPGEDPRFEIVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLMSIVPFYITLVVNLV
VESTPTLANLGRVAQVLRLMRIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAYTI
EKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITLIFNKFSHFYRRQ
KQLESAMRSCDFGDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPSELSLNDSLR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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