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Report for CCDS62841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62841.1 Public Homo sapiens 2 SH3YL1 24 110 108 CCDS HistoryNCBI Gene:26751Re-query CCDS DB by CCDS ID:62841.1Re-query CCDS DB by GeneID:26751See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62841.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403658.5 ENSP00000383928.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403658.5Link to Ensembl Protein Viewer:ENSP00000383928.1Re-query CCDS DB by Nucleotide ID:ENST00000403658Re-query CCDS DB by Protein ID:ENSP00000383928
Original member Current member EBI ENST00000403657.5 ENSP00000385668.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403657.5Link to Ensembl Protein Viewer:ENSP00000385668.1Re-query CCDS DB by Nucleotide ID:ENST00000403657Re-query CCDS DB by Protein ID:ENSP00000385668
Original member Current member NCBI NM_001282682.2 NP_001269611.1 Accepted alive Link to Nucleotide Sequence:NM_001282682.2Link to Protein Sequence:NP_001269611.1Re-query CCDS DB by Nucleotide ID:NM_001282682Re-query CCDS DB by Protein ID:NP_001269611Link to BLAST:NP_001269611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269611.1 227 Q96HL8-4 227 100% 0 0

Chromosomal Locations for CCDS 62841.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218811 219001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 229966 230044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231023 231191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233101 233229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 234160 234272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 242798 242800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGTATCAGACTTGGTGATAATTCTGAATTATGACCGTGCTGTAGAAGCTTTTGCAAAAGGCGGAAATC
TGACCCTCGGAGGGAACTTGACTGTGGCGGTTGGGCCCTTGGGAAGGAACTTGGAAGGAAACGTGGCCCT
GAGAAGCTCCGCTGCCGTCTTCACGTACTGCAAGTCAAGGGGACTCTTTGCAGGCGTGTCTTTAGAAGGG
AGCTGTTTGATTGAAAGGAAAGAAACTAATAGAAAATTTTATTGTCAAGATATCCGAGCTTATGACATTT
TATTTGGAGATACACCGCGGCCTGCTCAAGCCGAAGATCTTTATGAAATTCTTGATTCCTTTACTGAAAA
GTATGAAAATGAAGGACAACGAATCAATGCAAGAAAAGCAGCAAGGGAGCAGAGGAAGTCTTCTGCTAAA
GAATTACCTCCAAAGCCATTGTCAAGACCACAGCAGTCATCTGCACCAGTCCAGCTGAACTCTGGCTCTC
AAAGCAATTTGAATCAACCCATAGAAGTGACAGCGCTGTATTCATTTGAAGGACAGCAGCCTGGGGATTT
GAATTTTCAAGCTGGAGACAGAATCACAGTTATATCAAAAACAGATTCACATTTTGATTGGTGGGAAGGA
AAACTTCGAGGTCAAACTGGCATTTTTCCAGCCAACTACGTAACCATGAATTAA

Translation (227 aa):
MVSDLVIILNYDRAVEAFAKGGNLTLGGNLTVAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFAGVSLEG
SCLIERKETNRKFYCQDIRAYDILFGDTPRPAQAEDLYEILDSFTEKYENEGQRINARKAAREQRKSSAK
ELPPKPLSRPQQSSAPVQLNSGSQSNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEG
KLRGQTGIFPANYVTMN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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