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Report for CCDS62842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62842.1 Public Homo sapiens 2 SH3YL1 24 110 108 CCDS HistoryNCBI Gene:26751Re-query CCDS DB by CCDS ID:62842.1Re-query CCDS DB by GeneID:26751See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62842.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000626873.2 ENSP00000485824.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000626873.2Link to Ensembl Protein Viewer:ENSP00000485824.1Re-query CCDS DB by Nucleotide ID:ENST00000626873Re-query CCDS DB by Protein ID:ENSP00000485824
Original member Current member NCBI NM_001282687.2 NP_001269616.1 Accepted alive Link to Nucleotide Sequence:NM_001282687.2Link to Protein Sequence:NP_001269616.1Re-query CCDS DB by Nucleotide ID:NM_001282687Re-query CCDS DB by Protein ID:NP_001269616Link to BLAST:NP_001269616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269616.1 246 Q96HL8-3 246 100% 0 0

Chromosomal Locations for CCDS 62842.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218811 219001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 224864 224920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 229966 230044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231023 231191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 233101 233229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 234160 234272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 242798 242800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGGTATCAGACTTGGTGATAATTCTGAATTATGACCGTGCTGTAGAAGCTTTTGCAAAAGGCGGAAATC
TGACCCTCGGAGGGAACTTGACTGTGGCGGTTGGGCCCTTGGGAAGGAACTTGGAAGGAAACGTGGCCCT
GAGAAGCTCCGCTGCCGTCTTCACGTACTGCAAGTCAAGGGGACTCTTTGCAGGCGTGTCTTTAGAAGGG
AGCTGTTTGATTGAAAGGAAAGAAACTAATAGAAAATTTTATTGTCAAGATATCCGAGCTTATGACATTT
TATTTGGAGATACACCGCGGCCTGCTCAAGCCGAAGATCTTTATGAAATTCTTGATTCCTTTACTGAAAA
GTATGAAAATGAAGGACAACGAATCAATGCAAGAAAAGCAGCAAGGGAGCAGAGGAAGTCTTCTGCTAAA
GAATTACCTCCAAAGCCATTGTCAAGACCACAGCAGTCATCTGCACCAGTCCAGCTGAACTCTGGCTCTC
AAAGTAACAGAAATGAATATAAGCTCTATCCTGGACTTTCCAGCTATCATGAGAGAGTTGGCAATTTGAA
TCAACCCATAGAAGTGACAGCGCTGTATTCATTTGAAGGACAGCAGCCTGGGGATTTGAATTTTCAAGCT
GGAGACAGAATCACAGTTATATCAAAAACAGATTCACATTTTGATTGGTGGGAAGGAAAACTTCGAGGTC
AAACTGGCATTTTTCCAGCCAACTACGTAACCATGAATTAA

Translation (246 aa):
MVSDLVIILNYDRAVEAFAKGGNLTLGGNLTVAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFAGVSLEG
SCLIERKETNRKFYCQDIRAYDILFGDTPRPAQAEDLYEILDSFTEKYENEGQRINARKAAREQRKSSAK
ELPPKPLSRPQQSSAPVQLNSGSQSNRNEYKLYPGLSSYHERVGNLNQPIEVTALYSFEGQQPGDLNFQA
GDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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