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Report for CCDS6286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6286.1 Public Homo sapiens 8 RNF19A 24 110 108 CCDS HistoryNCBI Gene:25897Re-query CCDS DB by CCDS ID:6286.1Re-query CCDS DB by GeneID:25897See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6286.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341084.7 ENSP00000342667.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341084.7Link to Ensembl Protein Viewer:ENSP00000342667.2Re-query CCDS DB by Nucleotide ID:ENST00000341084Re-query CCDS DB by Protein ID:ENSP00000342667
Original member Current member EBI ENST00000519449.5 ENSP00000428968.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519449.5Link to Ensembl Protein Viewer:ENSP00000428968.1Re-query CCDS DB by Nucleotide ID:ENST00000519449Re-query CCDS DB by Protein ID:ENSP00000428968
Original member Current member NCBI NM_001280539.2 NP_001267468.1 Accepted alive Link to Nucleotide Sequence:NM_001280539.2Link to Protein Sequence:NP_001267468.1Re-query CCDS DB by Nucleotide ID:NM_001280539Re-query CCDS DB by Protein ID:NP_001267468Link to BLAST:NP_001267468.1
Original member Current member NCBI NM_001353837.2 NP_001340766.1 Accepted alive Link to Nucleotide Sequence:NM_001353837.2Link to Protein Sequence:NP_001340766.1Re-query CCDS DB by Nucleotide ID:NM_001353837Re-query CCDS DB by Protein ID:NP_001340766Link to BLAST:NP_001340766.1
Original member Current member NCBI NM_001353838.2 NP_001340767.1 Accepted alive Link to Nucleotide Sequence:NM_001353838.2Link to Protein Sequence:NP_001340767.1Re-query CCDS DB by Nucleotide ID:NM_001353838Re-query CCDS DB by Protein ID:NP_001340767Link to BLAST:NP_001340767.1
Original member Current member NCBI NM_015435.5 NP_056250.3 Accepted alive Link to Nucleotide Sequence:NM_015435.5Link to Protein Sequence:NP_056250.3Re-query CCDS DB by Nucleotide ID:NM_015435Re-query CCDS DB by Protein ID:NP_056250Link to BLAST:NP_056250.3
Original member Current member NCBI NM_183419.4 NP_904355.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_183419.4Link to Protein Sequence:NP_904355.1Re-query CCDS DB by Nucleotide ID:NM_183419Re-query CCDS DB by Protein ID:NP_904355Link to BLAST:NP_904355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001267468.1 838 Q9NV58-1 838 100% 0 0
NP_001340766.1 838 Q9NV58-1 838 100% 0 0
NP_001340767.1 838 Q9NV58-1 838 100% 0 0
NP_056250.3 838 Q9NV58-1 838 100% 0 0
NP_904355.1 838 Q9NV58-1 838 100% 0 0

Chromosomal Locations for CCDS 6286.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 100258556 100259246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100259854 100259997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100261542 100261755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100264034 100264195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100264671 100264785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100268785 100268947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100269869 100270013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100274953 100275161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100287501 100288174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2517 nt):
ATGCAAGAACAAGAAATAGGTTTTATCTCTAAATATAATGAAGGGCTGTGTGTAAACACTGACCCTGTCT
CAATTCTAACAAGCATTTTAGACATGAGTTTACATCGGCAAATGGGTTCAGATCGAGATCTTCAGTCCTC
TGCTTCATCTGTGAGCTTGCCTTCAGTCAAAAAGGCACCCAAAAAAAGAAGAATTTCAATAGGCTCCCTG
TTTCGGAGGAAAAAAGATAACAAACGTAAATCAAGGGAGCTAAATGGCGGGGTGGATGGAATTGCAAGTA
TTGAAAGTATACATTCTGAAATGTGTACTGATAAGAACTCCATTTTCTCTACAAATACCTCTTCTGACAA
TGGATTAACTTCCATCAGCAAACAAATTGGAGACTTCATAGAGTGCCCTTTGTGCCTTTTGCGGCATTCT
AAAGACAGATTTCCTGATATAATGACTTGTCATCACAGATCTTGTGTGGATTGCTTACGACAATATTTAA
GGATAGAAATCTCTGAAAGCAGAGTTAATATTAGTTGCCCAGAATGTACTGAACGGTTTAATCCCCATGA
TATTCGCTTGATATTAAGTGATGATGTCTTGATGGAAAAATACGAAGAATTTATGCTTAGACGGTGGCTT
GTTGCAGATCCTGATTGTAGGTGGTGTCCAGCTCCAGACTGTGGATATGCTGTGATAGCATTTGGATGTG
CCAGCTGTCCAAAATTAACTTGTGGGCGAGAGGGCTGTGGAACAGAGTTTTGCTACCACTGTAAACAGAT
TTGGCACCCCAACCAGACCTGTGATGCTGCTCGACAAGAGAGAGCCCAGAGCTTACGTTTGAGAACTATA
CGTTCTTCATCCATTAGTTATAGTCAAGAGTCTGGAGCAGCAGCTGATGATATAAAGCCATGTCCACGAT
GTGCTGCTTATATAATAAAGATGAATGATGGGAGCTGCAATCACATGACATGTGCTGTTTGTGGTTGTGA
GTTTTGTTGGTTGTGTATGAAAGAAATCTCAGATTTGCATTATCTAAGTCCATCAGGATGTACTTTTTGG
GGGAAGAAACCCTGGAGCCGAAAGAAGAAAATATTGTGGCAACTGGGAACACTGGTTGGTGCTCCTGTCG
GAATCGCTTTAATAGCTGGCATTGCTATTCCTGCAATGATTATTGGCATTCCTGTGTATGTGGGCCGCAA
GATTCACAATCGCTATGAAGGCAAGGATGTTTCAAAGCACAAACGGAATTTGGCCATAGCAGGTGGTGTA
ACGTTGTCTGTAATCGTGTCTCCAGTAGTAGCTGCAGTGACTGTAGGTATCGGTGTTCCTATTATGTTAG
CTTATGTCTATGGCGTAGTTCCAATTTCTCTTTGTCGAAGCGGAGGTTGTGGAGTCTCAGCAGGCAATGG
AAAAGGAGTTAGGATTGAATTTGATGATGAAAATGATATAAATGTTGGTGGAACTAACACAGCTGTAGAC
ACAACATCAGTAGCAGAAGCAAGACACAACCCAAGCATAGGGGAGGGAAGTGTTGGTGGGCTGACTGGCA
GTTTGAGTGCAAGTGGAAGCCACATGGATCGAATAGGAGCCATCCGAGACAACCTGAGTGAAACGGCCAG
CACCATGGCACTAGCTGGAGCCAGTATAACGGGGAGTCTGTCAGGAAGTGCCATGGTAAACTGTTTTAAC
AGGTTGGAAGTACAAGCAGATGTACAGAAAGAACGGTACAGTCTAAGTGGAGAATCTGGCACAGTCAGCT
TGGGAACAGTTAGTGATAATGCCAGCACCAAAGCAATGGCAGGATCCATTCTGAATTCCTACATCCCATT
GGACAAAGAAGGCAACAGTATGGAGGTGCAAGTAGATATTGAGTCAAAGCCATCCAAATTCAGGCACAAC
AGTGGAAGCAGTAGTGTGGATGATGGCAGTGCCACCCGAAGTCATGCTGGCGGTTCATCCAGTGGCTTGC
CTGAAGGTAAATCTAGTGCCACCAAGTGGTCCAAAGAAGCAACAGCAGGGAAAAAATCAAAAAGTGGTAA
ACTGAGGAAAAAGGGTAACATGAAGATAAATGAGACGAGAGAGGACATGGATGCACAGTTGTTAGAACAA
CAAAGCACGAACTCAAGTGAATTTGAGGCTCCATCCCTCAGTGACAGTATGCCTTCTGTAGCAGATTCTC
ACTCTAGTCATTTTTCTGAATTTAGTTGTTCTGACCTAGAAAGCATGAAAACTTCTTGTAGTCATGGTTC
CAGTGATTATCACACCCGCTTTGCTACTGTTAACATTCTTCCTGAGGTAGAAAATGACCGTCTGGAAAAT
TCCCCACATCAGTGTAGCATTTCTGTGGTTACCCAAACTGCTTCCTGTTCAGAAGTTTCACAGTTGAATC
ATATTGCTGAAGAACATGGTAACAATGGAATAAAACCTAATGTTGATTTATATTTTGGCGATGCACTAAA
AGAAACAAATAACAACCACTCACATCAGACAATGGAATTAAAAGTTGCAATTCAGACTGAAATTTAG

Translation (838 aa):
MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAPKKRRISIGSL
FRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHS
KDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWL
VADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTI
RSSSISYSQESGAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFW
GKKPWSRKKKILWQLGTLVGAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGV
TLSVIVSPVVAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDINVGGTNTAVD
TTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFN
RLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHN
SGSSSVDDGSATRSHAGGSSSGLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQ
QSTNSSEFEAPSLSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLEN
SPHQCSISVVTQTASCSEVSQLNHIAEEHGNNGIKPNVDLYFGDALKETNNNHSHQTMELKVAIQTEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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