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Report for CCDS6428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6428.1 Public Homo sapiens 8 FOXH1 24 110 108 CCDS HistoryNCBI Gene:8928Re-query CCDS DB by CCDS ID:6428.1Re-query CCDS DB by GeneID:8928See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6428.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377317.5 ENSP00000366534.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377317.5Link to Ensembl Protein Viewer:ENSP00000366534.4Re-query CCDS DB by Nucleotide ID:ENST00000377317Re-query CCDS DB by Protein ID:ENSP00000366534
Original member Current member NCBI NM_003923.3 NP_003914.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003923.3Link to Protein Sequence:NP_003914.1Re-query CCDS DB by Nucleotide ID:NM_003923Re-query CCDS DB by Protein ID:NP_003914Link to BLAST:NP_003914.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003914.1 365 O75593 365 100% 0 0

Chromosomal Locations for CCDS 6428.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144474238 144475056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144475157 144475261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144475583 144475756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGGGCCCTGCAGCGGCTCCCGCCTGGGGCCCCCAGAGGCAGAGTCGCCCTCCCAGCCCCCTAAGAGGA
GG
AAGAAGAGGTACCTGCGACATGACAAGCCCCCCTACACCTACTTGGCCATGATCGCCTTGGTGATTCA
G
GCCGCTCCCTCCCGCAGACTGAAGCTGGCCCAGATCATCCGTCAGGTCCAGGCCGTGTTCCCCTTCTTC
AGG
GAAGACTACGAGGGCTGGAAAGACTCCATTCGCCACAACCTTTCCTCCAACCGATGCTTCCGCAAGG
TG
CCCAAGGACCCTGCAAAGCCCCAGGCCAAGGGCAACTTCTGGGCGGTCGACGTGAGCCTGATCCCAGC
T
GAGGCGCTCCGGCTGCAGAACACCGCCCTGTGCCGGCGCTGGCAGAACGGAGGTGCGCGTGGAGCCTTC
GCC
AAGGACCTGGGCCCCTACGTGCTGCACGGCCGGCCATACCGGCCGCCCAGTCCCCCGCCACCACCCA
GT
GAGGGCTTCAGCATCAAGTCCCTGCTAGGAGGGTCCGGGGAGGGGGCACCCTGGCCGGGGCTAGCTCC
A
CAGAGCAGCCCAGTTCCTGCAGGCACAGGGAACAGTGGGGAGGAGGCGGTGCCCACCCCACCCCTTCCC
TCT
TCTGAGAGGCCTCTGTGGCCCCTCTGCCCCCTTCCTGGCCCCACGAGAGTGGAGGGGGAGACTGTGC
AG
GGGGGAGCCATCGGGCCCTCAACCCTCTCCCCAGAGCCTAGGGCCTGGCCTCTCCACTTACTGCAGGG
C
ACCGCAGTTCCTGGGGGACGGTCCAGCGGGGGACACAGGGCCTCCCTCTGGGGGCAGCTGCCCACCTCC
TAC
TTGCCTATCTACACTCCCAATGTGGTAATGCCCTTGGCACCACCACCCACCTCCTGTCCCCAGTGTC
CG
TCAACCAGCCCTGCCTACTGGGGGGTGGCCCCTGAAACCCGAGGGCCCCCAGGGCTGCTCTGCGATCT
A
GACGCCCTCTTCCAAGGGGTGCCACCCAACAAAAGCATCTACGACGTTTGGGTCAGCCACCCTCGGGAC
CTG
GCGGCCCCTGGCCCAGGCTGGCTGCTCTCCTGGTGCAGCCTGTGA


Translation (365 aa):
MGPCSGSRLGPPEAESPSQPPKRRKKRYLRHDKPPYTYLAMIALVIQAAPSRRLKLAQIIRQVQAVFPFF
R
EDYEGWKDSIRHNLSSNRCFRK
VPKDPAKPQAKGNFWAVDVSLIPAEALRLQNTALCRRWQNGGARGAF
A
KDLGPYVLHGRPYRPPSPPPPPSEGFSIKSLLGGSGEGAPWPGLAPQSSPVPAGTGNSGEEAVPTPPLP
S
SERPLWPLCPLPGPTRVEGETVQGGAIGPSTLSPEPRAWPLHLLQGTAVPGGRSSGGHRASLWGQLPTS
Y
LPIYTPNVVMPLAPPPTSCPQCPSTSPAYWGVAPETRGPPGLLCDLDALFQGVPPNKSIYDVWVSHPRD
L
AAPGPGWLLSWCSL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser