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Report for CCDS6434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6434.1 Public Homo sapiens 8 ZNF517 24 110 108 CCDS HistoryNCBI Gene:340385Re-query CCDS DB by CCDS ID:6434.1Re-query CCDS DB by GeneID:340385See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6434.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359971.4 ENSP00000353058.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359971.4Link to Ensembl Protein Viewer:ENSP00000353058.3Re-query CCDS DB by Nucleotide ID:ENST00000359971Re-query CCDS DB by Protein ID:ENSP00000353058
Original member Current member EBI ENST00000533965.5 ENSP00000435166.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533965.5Link to Ensembl Protein Viewer:ENSP00000435166.1Re-query CCDS DB by Nucleotide ID:ENST00000533965Re-query CCDS DB by Protein ID:ENSP00000435166
Original member Current member NCBI NM_001384904.1 NP_001371833.1 Accepted alive Link to Nucleotide Sequence:NM_001384904.1Link to Protein Sequence:NP_001371833.1Re-query CCDS DB by Nucleotide ID:NM_001384904Re-query CCDS DB by Protein ID:NP_001371833Link to BLAST:NP_001371833.1
Original member Current member NCBI NM_001384905.1 NP_001371834.1 Accepted alive Link to Nucleotide Sequence:NM_001384905.1Link to Protein Sequence:NP_001371834.1Re-query CCDS DB by Nucleotide ID:NM_001384905Re-query CCDS DB by Protein ID:NP_001371834Link to BLAST:NP_001371834.1
Original member Current member NCBI NM_213605.3 NP_998770.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_213605.3Link to Protein Sequence:NP_998770.2Re-query CCDS DB by Nucleotide ID:NM_213605Re-query CCDS DB by Protein ID:NP_998770Link to BLAST:NP_998770.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371833.1 492 Q6ZMY9 492 100% 0 0
NP_001371834.1 492 Q6ZMY9 492 100% 0 0
NP_998770.2 492 Q6ZMY9 492 100% 0 0

Chromosomal Locations for CCDS 6434.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144802915 144802947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144803641 144803767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144804125 144804238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144807191 144808395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGCGATGGCACTCCCGATGCCTGGACCTCAGGAGGCGGTTGTGTTCGAGGATGTGGCTGTGTACTTCA
CAAGGATAGAGTGGAGTTGCCTGGCCCCCGACCAGCAGGCACTCTACAGGGACGTGATGCTGGAGAACTA
TGGGAACCTGGCCTCACTAGGCTTTCTTGTTGCCAAACCAGCACTGATCTCCCTATTGGAGCAAGGAGAG
GAGCCGGGGGCCTTGATTCTGCAGGTGGCTGAACAGAGCGTGGCCAAAGCCAGCCTGTGCACAGATTCCA
GGATGGAGGCTGGGATCATGGAGTCTCCTCTGCAGAGAAAGCTCTCCAGGCAGGCAGGACTGCCGGGCAC
CGTGTGGGGGTGCCTCCCCTGGGGGCACCCTGTGGGGGGGCACCCTGCACCACCCCACCCGCATGGCGGT
CCTGAGGACGGGTCAGATAAACCCACCCACCCCCGGGCTCGGGAGCACAGCGCCTCCCCAAGGGTTCTGC
AGGAAGACCTGGGCCGGCCTGTGGGGAGCTCAGCCCCCCGCTACAGGTGCGTGTGCGGCAAGGCGTTCAG
ATACAACTCGCTGCTTCTCAGGCACCAGATCATCCACACCGGCGCCAAGCCCTTCCAGTGCACAGAGTGC
GGGAAGGCCTTCAAGCAAAGCTCCATCCTGCTGCGGCACCAGCTGATCCACACTGAGGAGAAGCCGTTCC
AGTGCGGCGAGTGCGGGAAGGCCTTCCGGCAGAGCACGCAGCTGGCTGCCCACCACCGCGTCCACACCCG
CGAGCGGCCCTACGCATGCGGCGAGTGCGGCAAGGCCTTCAGCCGCAGCTCCCGGCTGCTGCAGCACCAG
AAGTTCCACACCGGGGAGAAGCCCTTCGCGTGCACAGAGTGCGGCAAGGCGTTCTGCCGCAGGTTCACCC
TCAACGAGCACGGCCGCATCCACAGCGGGGAGCGGCCCTACCGGTGCCTGCGGTGTGGGCAGCGCTTCAT
CCGAGGGTCCTCGCTCCTGAAGCACCACCGGCTGCACGCGCAGGAGGGTGCCCAGGACGGCGGCGTGGGG
CAGGGCGCCCTGCTCGGAGCTGCGCAGAGGCCCCAGGCGGGGGACCCGCCCCACGAGTGCCCGGTGTGCG
GGAGGCCGTTCCGACACAACTCCCTGCTGCTGCTGCACCTGCGCCTACACACGGGCGAGAAGCCGTTCGA
GTGCGCGGAGTGCGGCAAGGCCTTCGGTCGCAAGTCCAACCTCACTCTGCACCAGAAGATCCACACCAAG
GAGAAGCCCTTCGCGTGCACCGAGTGCGGCAAGGCGTTCCGCAGGAGCTACACGCTGAACGAGCACTACC
GGCTCCACAGCGGCGAGAGGCCATACCGGTGCCGCGCCTGCGGGAGGGCCTGCAGCCGGCTGTCCACCCT
CATCCAGCACCAGAAGGTGCACGGCCGCGAGCCCGGGGAGGACACAGAGGGCAGGCGGGCGCCCTGTTGG
GCTTCCTGA

Translation (492 aa):
MAMALPMPGPQEAVVFEDVAVYFTRIEWSCLAPDQQALYRDVMLENYGNLASLGFLVAKPALISLLEQGE
EPGALILQVAEQSVAKASLCTDSRMEAGIMESPLQRKLSRQAGLPGTVWGCLPWGHPVGGHPAPPHPHGG
PEDGSDKPTHPRAREHSASPRVLQEDLGRPVGSSAPRYRCVCGKAFRYNSLLLRHQIIHTGAKPFQCTEC
GKAFKQSSILLRHQLIHTEEKPFQCGECGKAFRQSTQLAAHHRVHTRERPYACGECGKAFSRSSRLLQHQ
KFHTGEKPFACTECGKAFCRRFTLNEHGRIHSGERPYRCLRCGQRFIRGSSLLKHHRLHAQEGAQDGGVG
QGALLGAAQRPQAGDPPHECPVCGRPFRHNSLLLLHLRLHTGEKPFECAECGKAFGRKSNLTLHQKIHTK
EKPFACTECGKAFRRSYTLNEHYRLHSGERPYRCRACGRACSRLSTLIQHQKVHGREPGEDTEGRRAPCW
AS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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