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Report for CCDS6453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6453.1 Public Homo sapiens 9 SPATA6L 24 110 108 CCDS HistoryNCBI Gene:55064Re-query CCDS DB by CCDS ID:6453.1Re-query CCDS DB by GeneID:55064See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000461761.5 ENSP00000418458.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000461761.5Link to Ensembl Protein Viewer:ENSP00000418458.1Re-query CCDS DB by Nucleotide ID:ENST00000461761Re-query CCDS DB by Protein ID:ENSP00000418458
Original member Current member EBI ENST00000682582.1 ENSP00000506787.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682582.1Link to Ensembl Protein Viewer:ENSP00000506787.1Re-query CCDS DB by Nucleotide ID:ENST00000682582Re-query CCDS DB by Protein ID:ENSP00000506787
Original member Current member NCBI NM_001353486.2 NP_001340415.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001353486.2Link to Protein Sequence:NP_001340415.1Re-query CCDS DB by Nucleotide ID:NM_001353486Re-query CCDS DB by Protein ID:NP_001340415Link to BLAST:NP_001340415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340415.1 392 Q8N4H0-1 392 100% 0 0

Chromosomal Locations for CCDS 6453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 4604180 4604269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4605347 4605440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4617923 4618110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4618864 4618898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4622408 4622510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4625327 4625566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4629091 4629168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4635275 4635399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4656041 4656089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4661899 4662036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4666212 4666250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGCCTCTGGAGGTGGTGGTGGAGCTGCAGATCCGGGCGATTTCTTGCCCAGGAGTGTTCCTGCCTGGCA
AACAAGATGTGTACCTCGGGGTCTACCTCATGAATCAGTACCTGGAGACCAACAGCTTTCCCTCTGCGTT
CCCCATTATGATTCAGGAGAGCATGAGATTTGAAAAGGTATTTGAAAGTGCAGTAGATCCTGGAGCTGTA
GTAGACCTTTTGGAAATGTGGGATGAGTTGGCCTACTACGAAGAAAACACACGAGATTTTCTTTTCCCAG
AGCCCAAGCTGACACCTTCGCACCCTAGGAGGTGTAGGGAGGTGCTCATGAAGACGGCTCTGGGTTTTCC
AGGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCAGAGAATGTGTGTTTCTGCATAGAAAC
AGATTTCTTGAAGAAAGACATGAGTCACGGAGGCCTTTATCTACATCACATGAACCAATATTTCCCTTAA
ATACTATAAAGATGAAACTAAAGGAGAATAATCTCAACAGACTGCCCAAAGGCATGCAAGCCCGGGCGCC
CTCTCAATATTCTACCAGGCATTTCTTCCAGGACCAGCCAGCTCAGTTGAACCTTGGAAATAATTTCAAA
ATCTCTGGAGGAAGCAAGCCTCCATTTGTTGTTAGACACGTGGACAGTGCAAAGCCCTTTGGTGAGAATA
TTTCAGAGCATCATTTGAGGAGGTCTAGAAGAAAATCTAAGTTTTCAGACTTTCCGTTTCCAACGAGAAG
AGCTTCTTCTCTTGACAGCCTTGCAGCTAACGTAAAGGTTATCAAAGAGCCAGATGAACGGATTGTTTTA
AGGAGTGACTCATCATCATGTTTAGATTCAAGTCAGTTTGGAAAGTCTTCATCCAGTAAACAAGGGGATG
CTGATTTCCACGGGAAAGCTTCATTTGCCACCTACCAGCATTCCACCTCTCCTGGCCCCTTGGATCAGCC
CCTTCTCAGAGAAAGGTTCCATCCTGGTTCTCAGTCCACATGGAAGAATATCCATGAGAGGGTATGCAGT
CTTCTGACATCCCACAGAGCACAGCTGCACCAAAACAAGGAAGATTCTACCTCTGAAGTAAATTATATCA
TTGAAAGACCAAGCTACCCTCTGAAGAAATACTCACTGCATGAACAGAGATATTTTTAA

Translation (392 aa):
MPLEVVVELQIRAISCPGVFLPGKQDVYLGVYLMNQYLETNSFPSAFPIMIQESMRFEKVFESAVDPGAV
VDLLEMWDELAYYEENTRDFLFPEPKLTPSHPRRCREVLMKTALGFPGIAPKIEFSTRTAIRECVFLHRN
RFLEERHESRRPLSTSHEPIFPLNTIKMKLKENNLNRLPKGMQARAPSQYSTRHFFQDQPAQLNLGNNFK
ISGGSKPPFVVRHVDSAKPFGENISEHHLRRSRRKSKFSDFPFPTRRASSLDSLAANVKVIKEPDERIVL
RSDSSSCLDSSQFGKSSSSKQGDADFHGKASFATYQHSTSPGPLDQPLLRERFHPGSQSTWKNIHERVCS
LLTSHRAQLHQNKEDSTSEVNYIIERPSYPLKKYSLHEQRYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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