NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS68229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
68229.1 Public Homo sapiens 21 C21orf58 24 110 108 CCDS HistoryNCBI Gene:54058Re-query CCDS DB by CCDS ID:68229.1Re-query CCDS DB by GeneID:54058See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 68229.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397679.5 ENSP00000380796.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397679.5Link to Ensembl Protein Viewer:ENSP00000380796.1Re-query CCDS DB by Nucleotide ID:ENST00000397679Re-query CCDS DB by Protein ID:ENSP00000380796
Original member Current member EBI ENST00000397680.5 ENSP00000380797.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397680.5Link to Ensembl Protein Viewer:ENSP00000380797.1Re-query CCDS DB by Nucleotide ID:ENST00000397680Re-query CCDS DB by Protein ID:ENSP00000380797
Original member Current member EBI ENST00000397682.7 ENSP00000380798.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397682.7Link to Ensembl Protein Viewer:ENSP00000380798.3Re-query CCDS DB by Nucleotide ID:ENST00000397682Re-query CCDS DB by Protein ID:ENSP00000380798
Original member Current member EBI ENST00000397683.5 ENSP00000380799.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397683.5Link to Ensembl Protein Viewer:ENSP00000380799.1Re-query CCDS DB by Nucleotide ID:ENST00000397683Re-query CCDS DB by Protein ID:ENSP00000380799
Original member Current member NCBI NM_001286462.2 NP_001273391.1 Accepted alive Link to Nucleotide Sequence:NM_001286462.2Link to Protein Sequence:NP_001273391.1Re-query CCDS DB by Nucleotide ID:NM_001286462Re-query CCDS DB by Protein ID:NP_001273391Link to BLAST:NP_001273391.1
Original member Current member NCBI NM_001286463.1 NP_001273392.1 Accepted alive Link to Nucleotide Sequence:NM_001286463.1Link to Protein Sequence:NP_001273392.1Re-query CCDS DB by Nucleotide ID:NM_001286463Re-query CCDS DB by Protein ID:NP_001273392Link to BLAST:NP_001273392.1
Original member Current member NCBI NM_001286476.2 NP_001273405.1 Accepted alive Link to Nucleotide Sequence:NM_001286476.2Link to Protein Sequence:NP_001273405.1Re-query CCDS DB by Nucleotide ID:NM_001286476Re-query CCDS DB by Protein ID:NP_001273405Link to BLAST:NP_001273405.1
Original member Current member NCBI NM_001286477.2 NP_001273406.1 Accepted alive Link to Nucleotide Sequence:NM_001286477.2Link to Protein Sequence:NP_001273406.1Re-query CCDS DB by Nucleotide ID:NM_001286477Re-query CCDS DB by Protein ID:NP_001273406Link to BLAST:NP_001273406.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273391.1 216 P58505-3 216 100% 0 0
NP_001273392.1 216 P58505-3 216 100% 0 0
NP_001273405.1 216 P58505-3 216 100% 0 0
NP_001273406.1 216 P58505-3 216 100% 0 0

Chromosomal Locations for CCDS 68229.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 46301999 46302154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 46302485 46302576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 46311456 46311567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 46314716 46315006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGCCATCCTGCCCGGAGAGGCGCCTGTACCTGGCCCAGGCTGGCCTGAGCCTGATGCTGGGGGTGCCT
CTGTGGCGTTGGGGCTCCCCGTCCCCGTGTGCAGCAGCTCTGCATCGGCCTTGCAGGAACAACACCTCCT
GGACGAGCTCTCTCGGGCCCAGGCCTGGAGCGGGCCAAGCAGAGGAGCCCTCGGGTCAGCCCTGCCCCCA
GAGCTGCCCCCCACGGGCATCCTACCCACTGCCTCCCCATCCCCGCTGGCCCCAGACCCGCCAAGGATCA
TCCTGCCTACGGTCCCCCAGCCTCCTGCCACCATCATTCAGCAGCTCCCTCAGCAGCCACTCATAGCACA
GATTCCTCCTCCCCAGGCCTTCCCTACTCAACGGTCAGGAAGTATTAAGGAAGACATGGTGGAGCTGCTG
CTGCTGCAGAACGCACAGGTGCACCAGTTGGTCCTGCAGAACTGGATGCTCAAGGCCCTGCCCCCAGCCC
TGCAGGACCCGCCACATGTGCCCCCGAGGGTCCCACGAGCTGCCAGGCCAAGGCTGCCTGCCGTGCACCA
CCACCACCACCACCACCATGCTGTGTGGCCACCTGGGGCTGCCACTGTCCTCCAGCCCGCCCCCAGCCTG
TGGACGCCTGGCCCACCCTGA

Translation (216 aa):
MAILPGEAPVPGPGWPEPDAGGASVALGLPVPVCSSSASALQEQHLLDELSRAQAWSGPSRGALGSALPP
ELPPTGILPTASPSPLAPDPPRIILPTVPQPPATIIQQLPQQPLIAQIPPPQAFPTQRSGSIKEDMVELL
LLQNAQVHQLVLQNWMLKALPPALQDPPHVPPRVPRAARPRLPAVHHHHHHHHAVWPPGAATVLQPAPSL
WTPGPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH