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Report for CCDS70181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70181.1 Public Mus musculus 11 Sec24a 23 108 98 CCDS HistoryNCBI Gene:77371Re-query CCDS DB by CCDS ID:70181.1Re-query CCDS DB by GeneID:77371See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038210.11 ENSMUSP00000044370.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038210.11Link to Ensembl Protein Viewer:ENSMUSP00000044370.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038210Re-query CCDS DB by Protein ID:ENSMUSP00000044370
Original member Current member NCBI NM_001290785.1 NP_001277714.1 Accepted alive Link to Nucleotide Sequence:NM_001290785.1Link to Protein Sequence:NP_001277714.1Re-query CCDS DB by Nucleotide ID:NM_001290785Re-query CCDS DB by Protein ID:NP_001277714Link to BLAST:NP_001277714.1

Chromosomal Locations for CCDS 70181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51695127 51695241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51696649 51696752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51700814 51700906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51701158 51701262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51704276 51704413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51707128 51707303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51708935 51709045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51712189 51712362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51713531 51713689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51715125 51715245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51716439 51716645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51717724 51717779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51721815 51721933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51723584 51723696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51726485 51726594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51729452 51729575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51731803 51731905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51733392 51733564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51733770 51733927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51734584 51734661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51736351 51736521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51743536 51744000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51756077 51756173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3270 nt):
ATGGCCCAGCCCCGGATCCCCGCTGCCCGCGGTGCCGCAGCTAGCCTCCAGGCCCAGAACGGAGCCGCCT
CAGCCTCGGGGTCTCCCTACACCAACGGTCCTGTCCACAATACACTGATGTCTCCACAAGTGTCATCGAG
TCAAGGCTATGATTCGCAACCTCCAGGATCCTACCCTCGTCCAATGCCAGCAAAGACTTTGAATCCATTC
TCTGCACAGTCGAACTACGGTGGTTCTCAGGGATCTGGGCAGACTCTTAATAGTCCACTTGTGACTTCCG
GTCCAGTACTACCTTCACTTCATAGTGGTCCTGTTCCCCGAATGCCACTACCTACTTCTCAGAACCCAGC
TGCTACACCAATGCCTTCTGGTAGCTTTCTTCCTGGAGCCAACCCACCCCCACCTTTGAATTGGCAATAT
AACTATCCATCCACAGGACCGCAGACTAACCATTTTCCTCATGTAGCTCCACCAACTCTACCTGGGAATC
CAAATTTAACAGCGGATCATCAATATGTTTCTTCTGGAGACCCTGCACTTCAAACCAGCTTCAAAAAGCC
AGGTTCTGCACTTCCCTTACAGAACCCACCTCTGCCCCCCACTTTTCAGCCAGGAGCTCCTCCTGGGCCC
CCTCCAGCTGGAGGCCCACCTCCCAGCCGGGGCCCCGCGCCCCAGAAAACACCTCCTCGGGCTGCACCCC
CACCTTCATTTAACTCAGCTGTCAATCAGGAAGGTATTACGTCAAATGCCAATAATGGATCTACGGCGGC
TCATAATACTTATGATGAGATTGAAGGAGGTGGCTTCTTGGCAACACCACAGCTTGTTAATCAGAACCCC
AAAACAAGCCGAAGTGTGGGCTCTGCATACCCCTCCCTGCCACCAGGCTACCAGAACAGCGCACCACCTG
TGGCTGGGATGCCACCACCCTCCCTCAGTTACCCAAGTGGCCCCCAGGCCTTTACTCAGACTCCCTTAGG
TGCTAATCATTTAACTGCAAGCATGAGTGGATTAAGTCTGCATCCAGAGGGACTAAGAGTTGTCAATCTT
CTTCAAGAAAGGAACATGCTTCCTTCCACACCACTGCAGCCTCCAGTCCCAAATCTGCTTGAAGACATCC
AGAAACTCAACTGTAACCCAGAGTTGTTCCGATGCACGCTGACGAGTGTCCCTCAGACTCAGGCCTTACT
GAATAAAGCCAAGCTTCCTCTGGGGCTGCTGCTCCACCCCTTCAAGGACCTAGTGTTGCCCGTGGTCACC
TCCAGCACAATTGTGAGATGCCGTTCATGCAGGACTTACATTAACCCTTTCGTCAACTTCCTTGATCAAA
GAAGGTGGAAATGTAACTTATGTTATCGAGTCAATGATGTTCCTGAAGAATTCATGTACAACCCTTTAAC
CAGAGTTTATGGAGAACCTCACAAAAGACCTGAAGTCCAGAATGCTACTATTGAGTTTATGGCTCCTTCA
GAATACATGTTACGACCACCACAACCTCCAGTGTACCTCTTTGTATTTGATGTATCTCACAACGCAATAG
AAACTGGATACTTGAATTCAGTTTGCCAGAGTTTGTTAGACAATCTGGATCTGCTTCCTGGCAACACTAG
GACAAAAATCGGTTTCATAACATTTGATAGCACTATCCATTTCTACAGTCTTCAGGAAGGTCTCTCCCAG
CCTCAGATGCTAATAGTTTCAGATATTGACGATGTTTTTATCCCTATGCCAGAGAACTTACTAGTAAACT
TAAATGAAAGTAAAGAGCTTGTTCAAGATTTACTGAAAACGCTGCCACAAATGTTTACGAAGACGCTGGA
GACCCAGAGTGCCTTGGGTCCTGCACTTCAGGCTGCATTCAAGCTGATATCACCAACTGGTGGTCGAATG
TCTGTCTTCCAAACACAACTCCCAACGCTTGGTGTAGGAGCTCTGAAACCACGAGAGGAACCCAACCAAA
GGTCATCTGCTAAGGAAATACATCTGACACCATCCACTGACTTCTATAAGAAATTAGCCTTGGACTGTTC
TGGGCAGCAAGCAGCTGTTGACTTATTCCTTCTCAGTGGACAGTATTCTGATTTGGCTTCCCTAGGCTGC
ATCTCTCGGTACTCAGCGGGTAGTGTGTATTACTATCCCTCGTACCATCACCAGCACAACCCAGTGCAAG
TACAGAAACTACAGAAGGAACTACACAGGTACCTCACTCGGAAGATTGGATTTGAGGCAGTCATGAGGAT
CCGGTGCACCAAAGGTCTTTCCATTCATACTTTCCATGGGAACTTCTTCGTCCGTTCTACAGACTTACTG
TCTCTTCCCAATGTCAACCCAGATGCTGGGTATGCGGTCCAGATGTCAGTAGAAGAGAGTCTCACTGACA
CTCAGCTGGTTTCCTTCCAGTCAGCACTCTTATATACATCAAGCAAAGGTGAAAGAAGAATCCGTGTGCA
TACTTTGTGTTTGCCGGTAGTTTCTACCCTGAATGAAGTCTTTCTTGGAGCTGATGTGCAAGCAATTTCA
GGGTTATTAGCCAATATGGCTGTTGACAGGTCGGTGACTGCCAGCCTGAGTGATGCCCGGGATGCTCTGG
TGAACGCTGTCATCGACTCTCTCTCAGCTTACCGCTCTTCAGTCCTGAGTGGTCAGCAGCCAGGCCTCAT
GGTTCCTTTCTCCTTGAGGCTTTTCCCACTTTTTGTGTTGGCTCTCCTAAAACAGAAATCTTTCCAGACT
GGGACAAGTATACGTCTAGATGAACGAATTTTTGCCATGTGTCAAGTGAAAAGCCAGCCATTGGTTCACC
TCATGCTCACAACACATCCCAGTTTGTACAGAGTTGACAACCTCTCAGATGAGGGAGCTCTCAACATCAA
TGACAGAACCATACCTCAGCCCCCCATTCTTCAGCTCTCGGTGGAGAAGTTGAGCAGAGATGGAGCGTTC
CTCATGGATGCAGGCTCATTACTGATGCTTTGGGTTGGAAGAAATTGTTCACAGAATTTTCTCAGCCAAG
TTCTGGGAGTTCAAAACTATGCATCAATTCCACAGACAATGACAGATCTTCCAGAACTTGATACACCAGA
ATCTGCCAGAATAGCAGCGTTCATCTCATGGCTCAGAGAACAGAGGCCATTTTTCCCAGTACTCTATGTA
ATCAGGGAGGAGAGTCTTATGAAAGCAGCCTTCCTTCAGAGCTTGGTAGAAGACAGAACAGAGTCTGCAC
TGTCATATTATGAATTCCTCCTGCACATACAGCAGCAAGTGAACAAGTGA

Translation (1089 aa):
MAQPRIPAARGAAASLQAQNGAASASGSPYTNGPVHNTLMSPQVSSSQGYDSQPPGSYPRPMPAKTLNPF
SAQSNYGGSQGSGQTLNSPLVTSGPVLPSLHSGPVPRMPLPTSQNPAATPMPSGSFLPGANPPPPLNWQY
NYPSTGPQTNHFPHVAPPTLPGNPNLTADHQYVSSGDPALQTSFKKPGSALPLQNPPLPPTFQPGAPPGP
PPAGGPPPSRGPAPQKTPPRAAPPPSFNSAVNQEGITSNANNGSTAAHNTYDEIEGGGFLATPQLVNQNP
KTSRSVGSAYPSLPPGYQNSAPPVAGMPPPSLSYPSGPQAFTQTPLGANHLTASMSGLSLHPEGLRVVNL
LQERNMLPSTPLQPPVPNLLEDIQKLNCNPELFRCTLTSVPQTQALLNKAKLPLGLLLHPFKDLVLPVVT
SSTIVRCRSCRTYINPFVNFLDQRRWKCNLCYRVNDVPEEFMYNPLTRVYGEPHKRPEVQNATIEFMAPS
EYMLRPPQPPVYLFVFDVSHNAIETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYSLQEGLSQ
PQMLIVSDIDDVFIPMPENLLVNLNESKELVQDLLKTLPQMFTKTLETQSALGPALQAAFKLISPTGGRM
SVFQTQLPTLGVGALKPREEPNQRSSAKEIHLTPSTDFYKKLALDCSGQQAAVDLFLLSGQYSDLASLGC
ISRYSAGSVYYYPSYHHQHNPVQVQKLQKELHRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLL
SLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTLNEVFLGADVQAIS
GLLANMAVDRSVTASLSDARDALVNAVIDSLSAYRSSVLSGQQPGLMVPFSLRLFPLFVLALLKQKSFQT
GTSIRLDERIFAMCQVKSQPLVHLMLTTHPSLYRVDNLSDEGALNINDRTIPQPPILQLSVEKLSRDGAF
LMDAGSLLMLWVGRNCSQNFLSQVLGVQNYASIPQTMTDLPELDTPESARIAAFISWLREQRPFFPVLYV
IREESLMKAAFLQSLVEDRTESALSYYEFLLHIQQQVNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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