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Report for CCDS70212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70212.1 Public Mus musculus 11 Usp43 23 108 98 CCDS HistoryNCBI Gene:216835Re-query CCDS DB by CCDS ID:70212.1Re-query CCDS DB by GeneID:216835See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108677.1 ENSMUSP00000104317.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108677.1Link to Ensembl Protein Viewer:ENSMUSP00000104317.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108677Re-query CCDS DB by Protein ID:ENSMUSP00000104317
Original member Current member NCBI NM_001291049.1 NP_001277978.1 Accepted alive Link to Nucleotide Sequence:NM_001291049.1Link to Protein Sequence:NP_001277978.1Re-query CCDS DB by Nucleotide ID:NM_001291049Re-query CCDS DB by Protein ID:NP_001277978Link to BLAST:NP_001277978.1

Chromosomal Locations for CCDS 70212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67855481 67856544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67875263 67875427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67876373 67876531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67879811 67880144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67880265 67880391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67881206 67881283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67883206 67883309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67887750 67887861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67891350 67891485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67893013 67893148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67897221 67897356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67898884 67898976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67904321 67904424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67913754 67913885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67921545 67922048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3384 nt):
ATGGATCCGGGCGTGGGGAACGCACTGGGAGAGGGGCCGCCCGCGCCCCGGCCCCGCCGCCGCCGTTCCC
TTCGCCGCCTGCTTAACCGCTTCCTGCTAGCTCTGGGCAGCCGCTCCCGCTCGGGGGACTCGCCGCCCCG
GCCCCCGGCCCAGCCCAGTCCCTACGATGGCGATGGAGAAGGGGGCTTTGCCTGCGCCCCGGGCCCGGCA
CCAGCCTCTGCCGGGAGTCCAGGGCCAGATCGTCCTCCGGGATCCCAACCCCAGATATCTTCGGGTGACG
GGGCGCGTCCGCCCGGCGCTCAGGGCTTGAAGAACCATGGCAACACCTGTTTCATGAACGCGGTGGTGCA
GTGTCTCAGCAACACCGACCTGCTGGCCGAGTTCCTAGCGCTGGGGCGCTACCGGGCGGCGCCGGGCCGC
GCCGAGGTCACCGAGCAGCTGGCGGCGCTGGTGCGCGCGCTCTGGACGCGCGAATACACGCCCCAACTTT
CCGCAGAGTTCAAGAATGCTGTTTCTAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGCCCT
GGAATTCCTGCTCTGGCTTCTGGATCGTGTCCACGAGGACTTGGAAGGCTCAGCTCACGGGCTGGTATCT
GAGCAGCTGCCCCCAGAAGTGAGTAAGATCTCAGAGGACCTCCGGCCATCTGCAGCTCCTACCTCCTTAG
GGCCCAGCTTTGTGCAGAGCCACTTTCAAGCACAGTACAGGTCTTCCTTGACTTGTCCACACTGCCTAAA
ACAAAGCAACACCTTCGACCCTTTCCTGTGTGTGTCCCTTCCCATCCCCTTGCGCCAGACGAGATTCTTG
AGTGTCACTTTGGTGTTCCCCTCAAAGAGCCAGCGGTTTCTGCGTGTTGGCTTGGCCGTGCCAATCCTCA
GCACAGTGGCGGCCTTGAGGAAGATGGTTGCAGAGGAAGGAGGTGTCCCTGCAGAGGAGGTGATCTTGGT
TGAACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAGGACCTGAATACCATTGCAGAGGGT
GACAATGTGTATGCTTTCCAAGTCCCTCCTTCACCTGGTCTGGGGACGCTCTCAGCCCATCCGTCTGGTC
TGTCAGTGTCACCGCGCTTGCCAGTCCGTGACAGCCAGCGATTCTCTGGGCCTCTCCACAGCGAGAACAG
GGTGGTCTTTCTCTTCTGTAACCTGGTGGGCTCAGGGCAGCAGGCGAGCAGGTTTGGACCACCGTTCTTG
ATTCGGGAAGATAGAACAATCTCCTGGGCCCAGCTTCAACAGTGTATTCTCAGCAAGGTTCGATGCCTCA
TGAGGAGTGAGGTCTCTGCACAGGACCTGGGGACTCTGTTCTCCATCCGGGTTGTGGGGCTCTCCTTGGC
CTGCAGCTACTTATCTCCAAAGGACAACCGGCCCCTTTGCCACTGGGCAGTTGACAGGGCTTTGCACCTC
AGGAGGCCAGGAGGCCCTCCTCATGTCAAGCTGGCTGTGGAATGGGACAGCTCTGTCACAGAGCGCCTGT
TTGGGAGCCTCCAGGAGGAACGGGTCCAGGATGCAGACAGTGTGTGGCGGCAGCAGCAGGCACACCAGCA
GCCCAGCTGTACCCTGGACGAATGTTTTCAGTCCTATACCAAGGAGGAACAGCTGGCCCAGGATGATGCA
TGGAAGTGCCCTCACTGCCAAGTCCTCCAGCAGGGTGTGGTCAAGCTGAGTCTGTGGACTCTGCCCGACA
TCCTGATCATCCATCTGAAACGGTTCTGTCAGGTGGGAGAGAGAAGGAACAAGCTCTCCACGCTGGTGAA
GTTCCCACTGTCTGGACTCAACATGGCTCCCCATGTAGCACGGAGGAGCACCAACTCCAAGGCGGGGCCC
GGCCCTTGGTCCTCCTGGAAGCAGCCGATCTGCCTCCCCACCACCTACCCGCTGGACTTCCTCTACGACT
TGTATGCTGTCTGCAACCACCATGGCAGTCTGCAAGCCTATTGCCGGAACTCCCTGGACGGCCAGTGGTA
CAGCTATGACGACAGCACAGTGGAGGCCCTGCGAGAGGATGAGGTCAACACCAGGGGGGCTTACATCCTA
TTCTACCAGAAGCGGAACAGCATCCCTCCCTGGTCAGCCAGCAGCTCCATGAGAGGTTCCACCAGCTCCT
CCTTGTCTGATCATTGGCTCATGAGACTCGGGAGCCTCAACAACAGCACAAGGGGAAGCTTGCTGTCCTG
GAGCTCGGCCCCCTGCCCCTCCATGGCCCGGGTACCCGACTCTCCTGTCTTCACCAATGGTGTCTGCCAC
CAGGACAAGGGAGGAGTTGAGACCAGACCTTTGGTTCGGGGTGTTGGTGGCCGAAGTATCAGCATGAAGG
CATCTCCTGCTTCCCGATCCAGGCATGGGCCCTTCAAGACCATGCCCCTGAGGTGGTCATTTGGACACAG
GGAGAAACGTCCCGGGGCATCCGTTGAACTGGTGGAATACCTAGAGTCCAGAAGAAGACCCCGTTCTACC
AGCCAGTCCATTGTGCCGCTCTTGACTCGTGCTGCTGGTGGGGAAGAGACTTCAGCGTCACCGAGGTCAG
ATGGCACCCTTCCTGCTAAAAGTGAAGACAGCGGTCGAGCCATTGGGCAAGGAACAACTGGGGTGCCCCT
TTCCTCATGCCACCTCAACCACCATCCAGCCCTGGGGTCTTTAGATGACAGTCTGCACACTGCCAGGACA
CGAACGGGGAATGTAAGTCAGGATATCAGGCTCCCAAAAAAGTTTGACCTGCCCCTCACTGTGATGCCCT
CAGTGGGGGATGAAAAGCCAGCTCGCCCTGAGGGCCAGAAGATGACACCTTGGAAGGGAAGTAGCCAGGT
GGGAAGCCAGAGTAGCCCACCTTCCCCCTCCACTGGCTTGCTTAGAAACTTTAAGGACAGTGGCCCAGGT
ACCTTACCCAAGATGAAGTCTAAGGCTGCCATGGAGGAAAGGGCCCCTGACAAAGACAGGGGACAGGGGA
CATTCACTCTTTTGAAGTCTGTGTTTTGGAAGAAAGAACACAAGAGGACTGTCAGGACTGAGAGCTCACC
ACCAGCACCCCCAATCTCCCTAGGGAGTGACCGGCTGAGCCCTGCTGCCATGAATGAGCAGGCCCTCAGG
ATTCGAGAGAGCCCAGCCAAGGGCCTGGGCAACCACATGGAGAGGGACATCAGATCTGCGCCCAGCTCTC
TCCACCTCCCCCGAAAAGCCAGCAGGCCCCCTCGAGCCAGTACAGCTGGCACCTCACAAAGGACCATTCC
TGGGGAACAGATTTCTTATGGCACCCTGCAGAGAGTGAAATACCACACCCTTTCCTTAGGTCGAAAGAAA
TCCTTACCTGAGTCCAGCTTCTGA

Translation (1127 aa):
MDPGVGNALGEGPPAPRPRRRRSLRRLLNRFLLALGSRSRSGDSPPRPPAQPSPYDGDGEGGFACAPGPA
PASAGSPGPDRPPGSQPQISSGDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGR
AEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSAHGLVS
EQLPPEVSKISEDLRPSAAPTSLGPSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFL
SVTLVFPSKSQRFLRVGLAVPILSTVAALRKMVAEEGGVPAEEVILVELYPNGFQRSFFDEEDLNTIAEG
DNVYAFQVPPSPGLGTLSAHPSGLSVSPRLPVRDSQRFSGPLHSENRVVFLFCNLVGSGQQASRFGPPFL
IREDRTISWAQLQQCILSKVRCLMRSEVSAQDLGTLFSIRVVGLSLACSYLSPKDNRPLCHWAVDRALHL
RRPGGPPHVKLAVEWDSSVTERLFGSLQEERVQDADSVWRQQQAHQQPSCTLDECFQSYTKEEQLAQDDA
WKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVARRSTNSKAGP
GPWSSWKQPICLPTTYPLDFLYDLYAVCNHHGSLQAYCRNSLDGQWYSYDDSTVEALREDEVNTRGAYIL
FYQKRNSIPPWSASSSMRGSTSSSLSDHWLMRLGSLNNSTRGSLLSWSSAPCPSMARVPDSPVFTNGVCH
QDKGGVETRPLVRGVGGRSISMKASPASRSRHGPFKTMPLRWSFGHREKRPGASVELVEYLESRRRPRST
SQSIVPLLTRAAGGEETSASPRSDGTLPAKSEDSGRAIGQGTTGVPLSSCHLNHHPALGSLDDSLHTART
RTGNVSQDIRLPKKFDLPLTVMPSVGDEKPARPEGQKMTPWKGSSQVGSQSSPPSPSTGLLRNFKDSGPG
TLPKMKSKAAMEERAPDKDRGQGTFTLLKSVFWKKEHKRTVRTESSPPAPPISLGSDRLSPAAMNEQALR
IRESPAKGLGNHMERDIRSAPSSLHLPRKASRPPRASTAGTSQRTIPGEQISYGTLQRVKYHTLSLGRKK
SLPESSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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