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Report for CCDS70260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70260.1 Public Mus musculus 11 Crlf3 23 108 98 CCDS HistoryNCBI Gene:54394Re-query CCDS DB by CCDS ID:70260.1Re-query CCDS DB by GeneID:54394See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103233.9 ENSMUSP00000099523.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103233.9Link to Ensembl Protein Viewer:ENSMUSP00000099523.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103233Re-query CCDS DB by Protein ID:ENSMUSP00000099523
Original member Current member NCBI NM_001277106.1 NP_001264035.1 Accepted alive Link to Nucleotide Sequence:NM_001277106.1Link to Protein Sequence:NP_001264035.1Re-query CCDS DB by Nucleotide ID:NM_001277106Re-query CCDS DB by Protein ID:NP_001264035Link to BLAST:NP_001264035.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264035.1 344 Q9Z2L7-2 344 100% 0 0

Chromosomal Locations for CCDS 70260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80047662 80047737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80056452 80056584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80057792 80058014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80059200 80059377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80060098 80060185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80064192 80064399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80080784 80080912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGAAGGGCGCGATGGAGCCGGAGCCCGAGGTGCTGCTTCAGGAAGCCCGCGAGAACGTGGAGGCGGCGC
AGAGCTACCGGCGGGAGCTGGGCCAGCGGCTGCAGGGGCTGCGGGAGGCGCAGAGGCAGATAAAGGAGAG
TGCTTCACAGACAAGAGATGTCCTCAAACAGCATTTTAGTGATTTAAAAGGAACCCTTGGGAAGCTATTG
GATGAGCGATTGGTGACCCTTTTGCAAGAGGTGGACACCATTGAACAGGAGACCATCAAACCACTAGATG
ACTGCCAGAAACTCATAGAGCATGGGGTCAACACTGCAGATGACCTGGTCCGAGAAGGTGAGATTGCCAT
TCTTGGTGGTATCGAAGAAGAGAGTGATAAACTGTGGAACTTTACCAAAAAGGCCTCACACATTCAGCTG
GACAGCTTACCAGAAGTGCCCTTGCTAGTTGATGTACCCTGTTTGTCGGCTCAGTTGGACGATTCCATTC
TTAACATAGTGAAAGACCACATTTTTAAGCATGGAACAGTAGCTTCCCGCCCACCAGTACAGATTGAAGA
ATTAATAGAGAAACCTGGAGGCATCATAGTGCGATGGTGTAAGGTGGATGATGACTTCACAGCCCAAGAT
TACAGGCTTCAGTTCCGCAAATGTACTGCAAATCATTTTGAAGACGTGTATGTAGGTTCTGAAACGGAGT
TCATAGTGTTGCACATAGACCCCAATGTAGATTATCAATTCAGAGTCTGCGCCCGAGGAGACGGCAGGCA
GGAATGGAGTCCTTGGAGTGTTCCCCAGACAGGCCACTCCACACTGGTGCCTCATGAGTGGACAACTGGC
TTTGAGGGATACAGTCTGAGCAGTCGAAGAAATATAGCCCTCCGGAATGATGCCGAGTCCTCGGGTGTTC
TCTACTCCAGCGCTCCAACCTACTTCTGTGGGCAGACGCTGACATTCAGGTGCAGTCTTTGTCAATGGAA
AAGAAATGACCAATCAGTTGCCTGCAGTTACCTCTGGCTCCACTGTCACATTTGA

Translation (344 aa):
MKGAMEPEPEVLLQEARENVEAAQSYRRELGQRLQGLREAQRQIKESASQTRDVLKQHFSDLKGTLGKLL
DERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTADDLVREGEIAILGGIEEESDKLWNFTKKASHIQL
DSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELIEKPGGIIVRWCKVDDDFTAQD
YRLQFRKCTANHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVPQTGHSTLVPHEWTTG
FEGYSLSSRRNIALRNDAESSGVLYSSAPTYFCGQTLTFRCSLCQWKRNDQSVACSYLWLHCHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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