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Report for CCDS70312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70312.1 Public Mus musculus 11 Vps25 23 108 98 CCDS HistoryNCBI Gene:28084Re-query CCDS DB by CCDS ID:70312.1Re-query CCDS DB by GeneID:28084See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70312.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007533.14 ENSMUSP00000007533.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007533.14Link to Ensembl Protein Viewer:ENSMUSP00000007533.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000007533Re-query CCDS DB by Protein ID:ENSMUSP00000007533
Original member Current member NCBI NM_001284414.1 NP_001271343.1 Accepted alive Link to Nucleotide Sequence:NM_001284414.1Link to Protein Sequence:NP_001271343.1Re-query CCDS DB by Nucleotide ID:NM_001284414Re-query CCDS DB by Protein ID:NP_001271343Link to BLAST:NP_001271343.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271343.1 148 Q9CQ80-2 148 100% 0 0

Chromosomal Locations for CCDS 70312.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101253755 101253807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101254031 101254176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101254943 101254996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101256009 101256097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101256878 101256953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101257901 101257929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGGCGATGAGTTTCGAGTGGCCGTGGCAGTACCGCTTCCCGCCCTTCTTTACGTTACAGCCGAACGTGG
ACACCCGGCAGAAGCAGCTGGCCGCCTGGTGCTCTCTGGTTCTGTCCTTCTGCCGCCTGCACAAACAGTC
CAGCATGACGGTGATGGAAGCCCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCGGAAACTTCCT
GTGGAGTCAATTCAGATTGTATTAGAAGAACTGAGAAAGAAAGGGAACCTCGAGTGGTTGGATAAGAATA
AGTCTAGCTTCCTGATCATGTGGCGGAGGCCAGAAGAATGGGGGAAACTCATTTACCAATGGGTTTCCAG
GAGTGGCCAGAATAACTCTGTGTTTACTCTGTATGAACTGACGAGTGGGGAAGACACAGAGGATGAAGCG
AGCTCAAGATTTGTGGGTGTCAGCTGA

Translation (148 aa):
MAMSFEWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLP
VESIQIVLEELRKKGNLEWLDKNKSSFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLYELTSGEDTEDEA
SSRFVGVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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