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Report for CCDS70491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70491.1 Public Mus musculus 13 Gfm2 23 108 98 CCDS HistoryNCBI Gene:320806Re-query CCDS DB by CCDS ID:70491.1Re-query CCDS DB by GeneID:320806See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70491.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022170.7 ENSMUSP00000022170.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022170.7Link to Ensembl Protein Viewer:ENSMUSP00000022170.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022170Re-query CCDS DB by Protein ID:ENSMUSP00000022170
Original member Current member NCBI NM_001271465.1 NP_001258394.1 Accepted alive Link to Nucleotide Sequence:NM_001271465.1Link to Protein Sequence:NP_001258394.1Re-query CCDS DB by Nucleotide ID:NM_001271465Re-query CCDS DB by Protein ID:NP_001258394Link to BLAST:NP_001258394.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258394.1 777 Q8R2Q4-2 777 100% 0 0

Chromosomal Locations for CCDS 70491.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 97141948 97142010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97143008 97143092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97145653 97145704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97146220 97146317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97149309 97149434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97150325 97150413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97153228 97153316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97155190 97155250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97155421 97155600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97160087 97160167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97161019 97161167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97162852 97162992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97163075 97163174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97165011 97165197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97168266 97168342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97171486 97171624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97172512 97172691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97172940 97173055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97174862 97175044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97175600 97175737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGTTCACCAAATGGAGGATTTTTGCAGTGAATCATCAGAGAACGTTCAGTGTGCACCTTAATACCATGT
GTTACTGCAAAATAAAAGCAAATTTAAAAAGATTAAAGACTCAGCTGCCTCTTACAAGAAACTACAGTTC
TGCACCAGCAGGAAGTGATGTCAAGTCTCTTCATTCCGTCATTAACCCTCCTGTGGCCAAAATTCGTAAT
ATTGGAATTATGGCACATATTGATGCAGGCAAAACCACCACCACAGAGAGAATCCTGTACTATTCTGGAT
ACACAAGATCATTGGGAGATGTCGATGATGGAGACACAGTGACGGATTTCATGGCTCAAGAGCGAGAAAG
GGGCATTACCATCCAGTCAGCAGCTGTGACTCTCGACTGGAAAGGGTATAGAGTCAATCTGATTGATACT
CCAGGTCACGTAGACTTCACTCTGGAGGTCGAGCGCTGCTTGAGGGTGTTGGACGGTGCGGTGGCCGTGT
TTGACGCCTCTGCTGGTGTAGAGGCCCAGACTCTCACTGTATGGAGGCAAGCTGACAAACACAAAATACC
CCGGATCTGCTTTTTAAACAAGATGGACAAGACTGGAGCAAGTTTTAACTATGCGGTTGAAAGCATCCGG
GAGAAGTTAAAGGCAAAGCCCCTGATTTTACAGCTGCCAATTGGTGAAGCCAGAACTTTCCAAGGAGTGG
TGGATGTCGTAAACAAAGAAAAACTCCTTTGGAATTCTAACTCTGACGATGGAAAAGACTTCGAGAGGAT
GCCCCTCTCAGAAGCGAGTGATCGGGAACTGCTAAAGGAGACAATTGAAGCAAGGAACTCCTTAATTGAA
CAAGTTGCAGACTTAGATGATGAGTTTGCTGACTTGGTTTTAGGTGAATTTAGTGAAAACTTTGATTTAG
TACCAGCTGAAAAGTTACAGGCTGCAGTACACAGGGTGACACTGGCACAGGCTGCAGTGCCTGTGCTGTG
TGGGAGTGCCTTGAAGAACAAGGGCGTGCAGCCCCTGCTGGATGCGGTGACCACTTACCTGCCGTCACCC
GAGGAGCGCGAGGACCGCTTTCTGCAGTGGTATGAGGGTGACTTGTGTGCACTAGCGTTTAAAGTACTAC
ATGACAAACAGCGAGGACCCCTGGTTTTCCTGCGCATTTACTCGGGAACACTGACGCCTCAGCTGGCTGT
CCACAACATTAATAGAAACTGCACGGAAAGAATGAGTCGTCTGCTTTTGCCATTTGCTGACCAACATGTA
GAAATCCCTTCCCTGACTGCTGGAAACATTGCTTTGACAGTTGGGCTTAAACAAACTGCCACTGGAGACA
CCATAGTCTCGTCCAAGTCCAGCGCATTAGCTGCAGCTCGCAGAGCCGGACGAGGAGAAAGGGAGCATGG
AAAGAAGAGAGAGGCCGAGAGTCTGCTGTTGGCCGGGGTGGAGGTCCCAGAGCCTGTCTTCTTCTGCACC
ATAGAGCCCCCGTCAGTCGCTAAGCAGCCAGATTTAGATCATGCCTTGGAACGCCTTCAGCGCGAAGATC
CCAGTTTGAAAGTGAAACTCGATCCTGACTCTGGACAAACTGTCCTGTGTGGAATGGGGGAGTTGCATAT
TGAGATTATTCATGACCGTATCAAGAGGGAGTATGGCCTAGAGACCTATCTAGGGCCTCTGCAGGTGGCA
TACCGGGAAACCATCTTAAACTCAGTTCGCGCCACAGACACCCTCGATAGGGTGCTTGGAGACAAGCGGC
ACTTGGTGAGTGCGGAGCTGGAAGTCCGGCCAGCAGAAGAGCCCTGTGCTGTGGCCAAGATCGAGTATGC
TGACTGTGTGGGTGAAGACCTGCTGCAGGCCTCTCGGGAGGCCATTGAAAGTGCCGTCCACAGTGCATGC
CTCCAGGGACCTCTGCTCGGATCCCCAGTCCAGGATGTGGCAATGACGTTGCACTCACTGATGATTCACC
CTGGCACCTCCACAACTATGGTCACTGCCTGCATCTCACGGTGTATGCAGAAGGCCCTGAAGAAAGCTGA
CAAACAGGTGCTGGAACCTCTGATGAGTCTCGAGGTCACAGTGAGCAGGGAGTACCTCAGCCCTGTCCTG
GCAGACTTGGCACAAAGAAGAGGGAACATTCAGGAAATCCAGACTCGCCAAGACAACAGAGTTGTTCTAG
GATTCGTTCCTCTAGCAGAGATTATGGGATATTCAACTGTGCTTCGAACTCTGACATCTGGCTCAGCTAC
TTTTGCCTTAGAACTGTCTACTTATCAAGCCATGAGTCCTCAAGACCAGAGTGCTCTACTCAACCAGAGA
AGTGGCTTGGCCCATGTGCTATAG

Translation (777 aa):
MFTKWRIFAVNHQRTFSVHLNTMCYCKIKANLKRLKTQLPLTRNYSSAPAGSDVKSLHSVINPPVAKIRN
IGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVTLDWKGYRVNLIDT
PGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKHKIPRICFLNKMDKTGASFNYAVESIR
EKLKAKPLILQLPIGEARTFQGVVDVVNKEKLLWNSNSDDGKDFERMPLSEASDRELLKETIEARNSLIE
QVADLDDEFADLVLGEFSENFDLVPAEKLQAAVHRVTLAQAAVPVLCGSALKNKGVQPLLDAVTTYLPSP
EEREDRFLQWYEGDLCALAFKVLHDKQRGPLVFLRIYSGTLTPQLAVHNINRNCTERMSRLLLPFADQHV
EIPSLTAGNIALTVGLKQTATGDTIVSSKSSALAAARRAGRGEREHGKKREAESLLLAGVEVPEPVFFCT
IEPPSVAKQPDLDHALERLQREDPSLKVKLDPDSGQTVLCGMGELHIEIIHDRIKREYGLETYLGPLQVA
YRETILNSVRATDTLDRVLGDKRHLVSAELEVRPAEEPCAVAKIEYADCVGEDLLQASREAIESAVHSAC
LQGPLLGSPVQDVAMTLHSLMIHPGTSTTMVTACISRCMQKALKKADKQVLEPLMSLEVTVSREYLSPVL
ADLAQRRGNIQEIQTRQDNRVVLGFVPLAEIMGYSTVLRTLTSGSATFALELSTYQAMSPQDQSALLNQR
SGLAHVL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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