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Report for CCDS70847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70847.1 Public Mus musculus 17 Map4k3 23 108 98 CCDS HistoryNCBI Gene:225028Re-query CCDS DB by CCDS ID:70847.1Re-query CCDS DB by GeneID:225028See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 70847.1
This CCDS representation has an inferred exon combination because this gene lacks full-length transcript support. This representation is supported by tiling of partial mouse transcripts and by full-length orthologous alignments.

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 70847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025089.8 ENSMUSP00000025089.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025089.8Link to Ensembl Protein Viewer:ENSMUSP00000025089.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025089Re-query CCDS DB by Protein ID:ENSMUSP00000025089
Original member Current member NCBI NM_001290345.1 NP_001277274.1 Accepted alive Link to Nucleotide Sequence:NM_001290345.1Link to Protein Sequence:NP_001277274.1Re-query CCDS DB by Nucleotide ID:NM_001290345Re-query CCDS DB by Protein ID:NP_001277274Link to BLAST:NP_001277274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277274.1 894 Q99JP0 894 100% 0 0

Chromosomal Locations for CCDS 70847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 80581848 80581935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80582562 80582617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80584721 80584791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80592922 80593014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80593091 80593159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80597553 80597724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80602193 80602296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80603983 80604041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80605767 80605884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80605960 80606020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80609752 80609831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80612031 80612115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80613468 80613509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80613915 80614027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80615017 80615176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80616486 80616528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80618294 80618347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80618557 80618595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80624056 80624114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80629286 80629348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80630415 80630473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80636720 80636798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80644132 80644242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80644327 80644408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80644492 80644554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80644714 80644845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80649527 80649599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80651085 80651127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80653862 80653909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80654412 80654467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80655857 80655921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80663992 80664082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80680868 80680925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80727794 80727889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGAACCCGGGCTTCGATCTGTCCCGCCGGAACCCGCAGGAGGACTTCGAGCTGATCCAGCGCATCGGCA
GCGGCACCTACGGCGACGTCTACAAGGCACGGAATGTCAACACTGGAGAATTAGCAGCAATTAAAGTGAT
AAAATTGGAACCAGGAGAAGACTTTGCGGTTGTACAGCAAGAAATCATTATGATGAAAGACTGCAAACAC
CCAAACATTGTTGCTTATTTTGGAAGCTATCTCAGGCGAGATAAACTTTGGATTTGCATGGAATTCTGTG
GAGGTGGCTCTTTACAGGACATATATCATGTAACTGGACCCCTTTCAGAACTGCAGATTGCATATGTTAG
CAGAGAAACTCTACAGGGATTGTATTACCTTCACAGTAAAGGAAAAATGCACCGAGATATAAAGGGCGCT
AACATTCTCCTAACGGATAATGGTCACGTGAAACTAGCTGATTTTGGAGTTTCTGCACAGATAACAGCTA
CAATTGCCAAACGGAAGTCCTTCATTGGAACGCCATATTGGATGGCCCCAGAAGTCGCGGCTGTTGAGAG
GAAAGGCGGGTACAATCAACTGTGTGACCTCTGGGCGGTGGGCATCACTGCCATCGAGCTGGCGGAGCTC
CAGCCACCCATGTTTGACCTTCACCCGATGAGGGCATTGTTTCTAATGACAAAAAGCAATTTCCAGCCTC
CTAAACTAAAAGATAAGTTGAAGTGGTCAAATAGTTTCCATCATTTTGTGAAGATGGCTCTTACCAAAAA
TCCAAAGAAAAGACCCAATGCAGAAAAGCTGTTACAGCATCCCTTTGTCACACAGCCTCTGACACGGTCT
TTGGCAATCGAGTTGCTGGACAAAGTGAATAATCCAGACCATTCCACATACCACGATTTTGATGATGATG
ACCCAGAGCCTCTTGTTGCCGTACCACATAGAATTCCTTCAACGAGTAGAAATGTGAGAGAAGAAAAAAC
ACGCTCAGAGATAAACTTTGGCCAGGTAAAATTTGATCCGCCCTTAAGGAAGGAGACAGAGCCACATCAC
GAACTTCCCGACAGTGATGGTTTTTTCGACAGTTCAGAAGAAATATACTACACTGCAAGATCTAATCTGG
ATCTGCAACTAGAGTACGGACAAGGACACCAAAGCCATTGCTTCTTAGGTGGCAACAAGAGTCTTCTGAA
GTCTGTTGAAGAGGAATTACATCAGCGAGGACATGTGGCACACTTAGAAGATGACGAAGGCGACGATGAC
GACTCTAAGCATTCAACCATGAAAGCAAAAGTCCCGCCTCCTCTGCCACCAAAGCCTAAATCCATCTTCA
TACCACAGGATACACATTCTGCTGAGGACGGTAATCAAGGAACAATCAAGAGATGTCCCTCATCAGGGAG
CCCGGCAAAGCCATCCCACGTTCCACCTAGACCACCTCCGCCCAGGTTACCGCCACAGAAGCCTGCTGTT
TTAGGAAATGGAGTGAACTCCTTCCAGCTAAATGGTGAGCGAGACGGATCATTATATCAGCAGCAGAGTG
AGCAAAGAGGCACAAACCTTTCAAGAAAGGAGAAGAAGGACGTCCCGAAACCAATTAGTAATGGTCTTCC
CCCAACACCTAAAGTGCATATGGGAGCGTGTTTTTCAAAGGTTTTTAATGGATGTCCCTTGAAAATCCAC
TGTGCCACATCCTGGATAAACCCAGACACGAGAGACCAGTACTTGATATTTGGCGCTGAAGAGGGCATTT
ATACCCTTAATCTCAATGAACTTCATGAAACATCAATGGAACAGCTGTTCCCCCGCAGGTGTACGTGGCT
GTATGTGATGAACAATTGCCTGCTGTCAGTCTCGGGCAAAGCCTCTCAGCTTTACTCCCACAACTTACCG
GGGCTTTTCGATTATGCAAGACAGATGCAGAAGCTTCCAGTAGCCATCCCAGCACACAAGCTCCCCGACC
GAATACTGCCCAGGAAATTTGCTGTATCAGCAAAGATTCCTGAAACCAAATGGTGCCAGAAGTGCTGCGT
GGTGAGAAATCCTTACACGGGCCATAAGTACCTGTGCGGGGCGCTTCAGACCAGCATTGTTCTATTAGAA
TGGGTTGAGCCAATGCAGAAATTTATGTTAATTAAGCACATAGAGTTTCCTATGCCGTGTCCACTCCGGA
TGTTTGAGATGCTGGTGGTCCCTGAGCAGGAGTACCCTCTGGTCTGTGTTGGCGTCAGCAGAGGGCGAGA
CTTCAACCAAGTGGTTCGGTTTGAGACGGTCAATCCCAATTCTACCTCGTCGTGGTTTACAGAGTCAGAT
GCCCCGCAGACAAGCGTCACTCATGTGACCCAGCTGGAGAGAGACACCATCCTTGTGTGCTTGGATTGTT
GTATAAAAATAGTCAATCTCCAAGGAAGGTTGAAATCCAGCAGGAAATTGTCATCAGAACTCACCTTCGA
TTTCCAGATAGAGTCCATAGTTTGTCTACAAGACAGTGTGCTAGCGTTCTGGAAACACGGGATGCAAGGT
AGAAGCTTTAGATCTAATGAGGTAACACAAGAAATTTCAGATAACACAAGAATCTTCAGACTCCTTGGAT
CTGACAGGGTTGTGGTTTTGGAAAGTCGGCCAACTGATAACCCAACAGCAAATAGCAATTTATACATCTT
GGCGGGTCACGAAAACAGCTACTGA

Translation (894 aa):
MNPGFDLSRRNPQEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKH
PNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVTGPLSELQIAYVSRETLQGLYYLHSKGKMHRDIKGA
NILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDLWAVGITAIELAEL
QPPMFDLHPMRALFLMTKSNFQPPKLKDKLKWSNSFHHFVKMALTKNPKKRPNAEKLLQHPFVTQPLTRS
LAIELLDKVNNPDHSTYHDFDDDDPEPLVAVPHRIPSTSRNVREEKTRSEINFGQVKFDPPLRKETEPHH
ELPDSDGFFDSSEEIYYTARSNLDLQLEYGQGHQSHCFLGGNKSLLKSVEEELHQRGHVAHLEDDEGDDD
DSKHSTMKAKVPPPLPPKPKSIFIPQDTHSAEDGNQGTIKRCPSSGSPAKPSHVPPRPPPPRLPPQKPAV
LGNGVNSFQLNGERDGSLYQQQSEQRGTNLSRKEKKDVPKPISNGLPPTPKVHMGACFSKVFNGCPLKIH
CATSWINPDTRDQYLIFGAEEGIYTLNLNELHETSMEQLFPRRCTWLYVMNNCLLSVSGKASQLYSHNLP
GLFDYARQMQKLPVAIPAHKLPDRILPRKFAVSAKIPETKWCQKCCVVRNPYTGHKYLCGALQTSIVLLE
WVEPMQKFMLIKHIEFPMPCPLRMFEMLVVPEQEYPLVCVGVSRGRDFNQVVRFETVNPNSTSSWFTESD
APQTSVTHVTQLERDTILVCLDCCIKIVNLQGRLKSSRKLSSELTFDFQIESIVCLQDSVLAFWKHGMQG
RSFRSNEVTQEISDNTRIFRLLGSDRVVVLESRPTDNPTANSNLYILAGHENSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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