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Report for CCDS71133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71133.1 Public Mus musculus 2 Cops2 23 108 98 CCDS HistoryNCBI Gene:12848Re-query CCDS DB by CCDS ID:71133.1Re-query CCDS DB by GeneID:12848See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71133.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110463.7 ENSMUSP00000106090.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110463.7Link to Ensembl Protein Viewer:ENSMUSP00000106090.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110463Re-query CCDS DB by Protein ID:ENSMUSP00000106090
Original member Current member NCBI NM_001285507.1 NP_001272436.1 Accepted alive Link to Nucleotide Sequence:NM_001285507.1Link to Protein Sequence:NP_001272436.1Re-query CCDS DB by Nucleotide ID:NM_001285507Re-query CCDS DB by Protein ID:NP_001272436Link to BLAST:NP_001272436.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272436.1 450 P61202-2 450 100% 0 0

Chromosomal Locations for CCDS 71133.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 125832193 125832337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125833724 125833782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125834754 125834836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125836142 125836239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125839149 125839201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125839306 125839484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125840324 125840498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125842433 125842510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125842622 125842732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125844810 125844935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125848207 125848284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125849740 125849853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125858936 125858989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGTCTGACATGGAGGATGATTTCATGTGCGATGATGAGGAGGACTACGACCTGGAGTACTCTGAAGACA
GTAACTCTGAGCCCAATGTGGATTTGGAAAATCAGTACTATAATTCCAAAGCACTGAAAGAAGATGACCC
AAAAGCAGCATTAAGCAGCTTCCAAAAGGTTTTGGAGCTTGAAGGTGAGAAGGGAGAATGGGGATTCAAA
GCGCTAAAACAGATGATCAAGATTAACTTCAAGTTGACAAACTTTCCAGAAATGATGAACAGATATAAGC
AACTATTGACCTATATTCGGAGTGCAGTCACCAGGAACTATTCTGAAAAGTCCATTAATTCTATCCTTGA
TTATATCTCCACTTCTAAACAGAATTCTGATTTTTTATGTCAGATGGATTTACTGCAGGAATTTTATGAA
ACAACACTGGAAGCTTTGAAAGATGCTAAGAATGATAGACTGTGGTTTAAGACAAACACAAAGCTTGGAA
AATTATATTTAGAACGAGAAGAATATGGAAAGCTTCAAAAAATTTTACGACAGTTACATCAGTCTTGTCA
GACTGATGATGGAGAAGATGACCTGAAAAAAGGTACCCAGTTATTAGAAATCTATGCTTTGGAAATTCAA
ATGTACACTGCACAGAAGAACAACAAAAAGCTTAAAGCACTCTATGAGCAATCACTTCACATCAAGTCTG
CCATCCCTCACCCACTAATCATGGGTGTCATCAGAGAATGCGGTGGTAAGATGCACTTGAGAGAAGGTGA
ATTTGAAAAGGCACACACTGATTTTTTTGAAGCCTTCAAGAATTATGATGAATCAGGAAGCCCAAGACGA
ACCACTTGTTTAAAATATTTGGTTTTAGCAAATATGCTAATGAAATCAGGAATAAATCCGTTTGACTCAC
AAGAGGCCAAGCCGTATAAAAATGATCCAGAAATTCTAGCAATGACAAATTTAGTAAGTGCCTATCAGAA
TAATGACATCACTGAATTTGAAAAGATTCTGAAAACAAATCACAGCAACATCATGGATGATCCTTTCATA
AGAGAGCACATTGAAGAACTTTTACGAAACATCAGAACACAAGTCCTCATAAAGTTAATTAAGCCTTACA
CAAGAATACATATTCCTTTTATTTCTAAGGAGCTAAACATAGACGTAGCTGATGTGGAGAGCTTGCTGGT
GCAGTGCATACTGGATAACACTATTCATGGCCGAATTGATCAAGTCAACCAGCTCCTTGAACTGGATCAT
CAGAAGAGGGGTGGTGCCCGATACACTGCGCTAGATAAATGGACCAACCAACTAAATTCTCTGAACCAGG
CTGTGGTCAGTAAACTGGCTTAA

Translation (450 aa):
MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFK
ALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQNSDFLCQMDLLQEFYE
TTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQ
MYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR
TTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFI
REHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH
QKRGGARYTALDKWTNQLNSLNQAVVSKLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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