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Report for CCDS71171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71171.1 Public Mus musculus 2 Dlgap4 23 108 98 CCDS HistoryNCBI Gene:228836Re-query CCDS DB by CCDS ID:71171.1Re-query CCDS DB by GeneID:228836See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070782.12 ENSMUSP00000068745.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070782.12Link to Ensembl Protein Viewer:ENSMUSP00000068745.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000070782Re-query CCDS DB by Protein ID:ENSMUSP00000068745
Original member Current member EBI ENSMUST00000109567.9 ENSMUSP00000105195.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109567.9Link to Ensembl Protein Viewer:ENSMUSP00000105195.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109567Re-query CCDS DB by Protein ID:ENSMUSP00000105195
Original member Current member NCBI NM_001277186.1 NP_001264115.1 Accepted alive Link to Nucleotide Sequence:NM_001277186.1Link to Protein Sequence:NP_001264115.1Re-query CCDS DB by Nucleotide ID:NM_001277186Re-query CCDS DB by Protein ID:NP_001264115Link to BLAST:NP_001264115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264115.1 989 B1AZP2-2 989 100% 0 0

Chromosomal Locations for CCDS 71171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156700679 156701674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156704410 156704654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156705856 156705970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156707078 156707128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156711021 156711261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156745835 156746196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156748023 156748102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156748944 156749356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156760851 156760942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156761773 156761928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156762685 156762903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2970 nt):
ATGAAAGGCCTCGGTGACAGCCGCCCCCGCCACCTCTCCGACAGCCTGGACCCACCTCACGAGCCCCTCT
TTGCTGGACCTGACCGAAACCCCTACCTGCTGTCGCCCACCGAGGCCTTTGCCCGGGAAGCCCGCTTCCC
CGGGCAAAACACACTGCCGGGGGATGGGCTCTTCCCACTCAACAACCAGCTGCCCCCACCAAGCAGCACC
TTCCCCCGAATCCACTACAACTCCCACTTTGAGGTGCCCGAGGAAAGCCCATTCCCCAGCCACGCCCAAG
CCACTAAGATCAATCGGCTGCCCGCCAACCTCCTGGACCAGTTTGAGAAACAACTGCCTATCCACCGAGA
TGGCTTCAGCACCCTCCAGTTCCCCCGGGGGGAGGCCAAGGCCAGGGGTGAGAGTCCAGGCCGCATTCGC
CACCTGGTCCACTCTGTCCAGCGTCTCTTCTTCACTAAGGCACCCTCCATGGAGGGCACCGCGGGCAAGG
TGGGTGGCAATGGCAGCAAGAAAGGTGGCCTGGAGGACGGAAAAGGCCGGAGGGCCAAAAGCAAGGAACG
GGCCAAGGCTGGGGAGCCCAAACGGCGAAGCCGCTCCAACATCTCAGGCTGGTGGAGTTCAGATGACAAC
TTGGACGGTGAGGGTGGTGCCTTCCGCAGTGGCCCTGCCTCGGGGCTGATGACTCTGGGCCGCCAGCAAG
AACGCACCCAGCCCCGCTACTTCATGCACGCCTACAACACCATCAGTGGGCACATGCTCAAAACCACCAA
GAACACTACCACCGAGCTGACTGCCCCGCCGCCCCCGCCTGCTCCCCCTGCTACCTGTCCCAGCCTTGGA
GTGGGCACCGACACCAACTATGTCAAACGTGGTTCCTGGTCCACTCTGACCCTCAGTCATGCCCATGAGG
TCTGCCAGAAGACCTCAGCCACTTTGGATAAGAGCCTGCTCAAGTCCAAATCCTGCCACCAGGGTTTGGC
CTACCATTACCTGCAGGTGCCCGGCGGAGGGGGAGAGTGGAGCACCACGCTGCTATCCCCTCGAGACATG
GATAGCACCGCTGAGGGGCCCATCCCGTGCCGGCGCATGCGCAGTGGCAGCTATATCAAGGCCATGGGCG
ATGAAGACAGTGATGAGTCTGGGGGTGGTAGCCCCAAACCTTCACCCAAGACTGCAGCGCGGCGTCAGAG
CTACCTGAGGGCTACGCAGCAGTCCCTGGGAGAGCAGAGCAACCCTCGACGGAGTTTGGACCGCTTGGAT
TCAGTGGACATGCTGCTGCCTTCCAAGTGCCCCAGCTGGGAAGACGACTACAACCCCATCAGTGACAGCC
TCAATGACTCCAGCTGTATCAGCCAGGTTTTTGGACAGGCTTCCCTGATCCCCCAGTTGTTTGGCCATGA
TCAACAGGTCCGGGAGGCAGATCTGAGCGACCAGTACGAGGCAGCCTGCGAGTCGGCCTGCAGTGAGGCC
GAGTCTACAACCGCAGAGGCACTCGACTTGCCGCTGCCCAGCTACTTCCGCTCACGCAGCCACAGCTACC
TGCGAGCCATCCAGGCAGGCTGCTCGCAAGAGGAGGACAGTGTCTCCCTGCAGTCCCTCTCCCCACCGCC
CAGCACTGGCAGCCTCAGCAACAGTCGCACGCTTCCAAGTTCATCATGCCTAGTGGCATATAAGAAGACC
CCACCACCGGTCCCTCCACGAACCACATCGAAACCGTTCATCTCAGTCACCGTCCAGAGCAGTACTGAGT
CTGCTCAGGATACCTACCTGGACAGTCAAGACCACAAGAGCGAAGTGACGAGCCAGTCGGGCTTGAGCAA
CTCATCAGACAGCCTGGACAGCAGTACCCGGCCACCCAGTGTGACACGGGGTGGAATTACCCCAGGCCCT
GAAGCTCCGGAGCCACCCCCTAAGCATGCAGCTCTGAAGAGTGAACAAGGGACACTGACGAGCTCTGAGT
CCCATTCCGAGGCCATCCCCAAAAGGAAACTGTCATCGATAGGAATACAAGAGAGGACTAGAAGGAGCGG
TTCCCACCTCTCGGAGGACAACGGACCAAAAGCGATCGATGTGATGGCGCCCTCCTCAGAAAGCAGTGCC
CCCTCTCACAGCATGTCCTCCCGTCGGGACACTGACTCTGATACCCAGGATGCCAACGACTCCAGTTGTA
AGTCATCTGAGAGGAGTCTCCCAGACTGTACCTCACACCCCAATTCCATCAGCATTGATGCTGGCCCCCG
ACAGGCCCCCAAGATTGCCCAGATCAAGCGCAACCTCTCCTATGGAGACAACAGCGACCCTGCCCTGGAG
GCGTCTTCGCTGCCCCCACCCGACCCTTGGCTGGAGACTTCCTCCAGCTCCCCAGCAGAGCCCGCTCAGC
CAGGGGCCTGCCGCAGGGATGGCTACTGGTTCCTGAAGCTCCTTCAGGCAGAAACGGAGAGACTGGAAGG
CTGGTGCTGCCAGATGGACAAGGAGACCAAAGAGAACAACCTCTCTGAAGAAGTCTTAGGGAAAGTTCTC
AGTGCTGTGGGCAGCGCCCAGCTCCTGATGTCCCAGAAATTCCAGCAGTTCCGCGGCCTCTGTGAGCAGA
ACTTGAACCCTGATGCCAACCCCCGTCCGACAGCCCAGGACCTGGCAGGGTTCTGGGACCTGCTGCAGCT
GTCCATTGAGGACATCAGCATGAAGTTCGATGAGCTCTACCACCTCAAGGCCAACAGCTGGCAGCTGGTG
GAGACCCCCGAGAAGAGGAAGGAAGAGAAGAAGCCACCCCCTCCAGTCCCGAAGAAGCCAGCCAAATCCA
AGGCGGCAGTGAGCCGCGACAAGGCCTCAGACGCGGGGGACAAGCAGCGTCAGGAGGCCAGAAAGAGACT
CCTGGCCGCCAAGCGAGCAGCGTCTGTGCGGCAGAACTCGGCCACAGAGAGTGCGGACAGCATCGAGATT
TATGTCCCCGAGGCCCAGACCAGGCTCTAA

Translation (989 aa):
MKGLGDSRPRHLSDSLDPPHEPLFAGPDRNPYLLSPTEAFAREARFPGQNTLPGDGLFPLNNQLPPPSST
FPRIHYNSHFEVPEESPFPSHAQATKINRLPANLLDQFEKQLPIHRDGFSTLQFPRGEAKARGESPGRIR
HLVHSVQRLFFTKAPSMEGTAGKVGGNGSKKGGLEDGKGRRAKSKERAKAGEPKRRSRSNISGWWSSDDN
LDGEGGAFRSGPASGLMTLGRQQERTQPRYFMHAYNTISGHMLKTTKNTTTELTAPPPPPAPPATCPSLG
VGTDTNYVKRGSWSTLTLSHAHEVCQKTSATLDKSLLKSKSCHQGLAYHYLQVPGGGGEWSTTLLSPRDM
DSTAEGPIPCRRMRSGSYIKAMGDEDSDESGGGSPKPSPKTAARRQSYLRATQQSLGEQSNPRRSLDRLD
SVDMLLPSKCPSWEDDYNPISDSLNDSSCISQVFGQASLIPQLFGHDQQVREADLSDQYEAACESACSEA
ESTTAEALDLPLPSYFRSRSHSYLRAIQAGCSQEEDSVSLQSLSPPPSTGSLSNSRTLPSSSCLVAYKKT
PPPVPPRTTSKPFISVTVQSSTESAQDTYLDSQDHKSEVTSQSGLSNSSDSLDSSTRPPSVTRGGITPGP
EAPEPPPKHAALKSEQGTLTSSESHSEAIPKRKLSSIGIQERTRRSGSHLSEDNGPKAIDVMAPSSESSA
PSHSMSSRRDTDSDTQDANDSSCKSSERSLPDCTSHPNSISIDAGPRQAPKIAQIKRNLSYGDNSDPALE
ASSLPPPDPWLETSSSSPAEPAQPGACRRDGYWFLKLLQAETERLEGWCCQMDKETKENNLSEEVLGKVL
SAVGSAQLLMSQKFQQFRGLCEQNLNPDANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLV
ETPEKRKEEKKPPPPVPKKPAKSKAAVSRDKASDAGDKQRQEARKRLLAAKRAASVRQNSATESADSIEI
YVPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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