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Report for CCDS71182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71182.1 Public Mus musculus 2 Ptprt 23 108 98 CCDS HistoryNCBI Gene:19281Re-query CCDS DB by CCDS ID:71182.1Re-query CCDS DB by GeneID:19281See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71182.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109441.1 ENSMUSP00000105067.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109441.1Link to Ensembl Protein Viewer:ENSMUSP00000105067.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109441Re-query CCDS DB by Protein ID:ENSMUSP00000105067
Original member NCBI NM_001291149.1 NP_001278078.1 Updated not alive Link to Nucleotide Sequence:NM_001291149.1Link to Protein Sequence:NP_001278078.1Re-query CCDS DB by Nucleotide ID:NM_001291149Re-query CCDS DB by Protein ID:NP_001278078
Current member NCBI NM_001291149.2 NP_001278078.1 Accepted alive Link to Nucleotide Sequence:NM_001291149.2Link to Protein Sequence:NP_001278078.1Re-query CCDS DB by Nucleotide ID:NM_001291149Re-query CCDS DB by Protein ID:NP_001278078Link to BLAST:NP_001278078.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278078.1 1455 Q99M80-2 1455 100% 0 0

Chromosomal Locations for CCDS 71182.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 161529516 161529569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161530437 161530572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161533481 161533644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161534469 161534594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161547284 161547415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161551747 161551920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161553730 161553879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161555414 161555549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161558820 161558974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161560169 161560285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161560929 161560988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161564627 161564724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161566125 161566161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161575726 161575802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161587547 161587634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161607258 161607448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161656142 161656290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161697974 161698109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161732879 161732915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161766224 161766497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161810550 161810652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161811935 161812136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161901448 161901557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 161927482 161927778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162135212 162135505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162238007 162238181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162253753 162253868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162267988 162268069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162278048 162278319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162362901 162363026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 162660800 162660899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4368 nt):
ATGGGGAGCCTTGGCGGGCTCGCCCTCTGCCTGCTCCGGCTCCTGCTCCTGGGGCTGCAGCGGCCGCCGT
TGCCCGGCGCCGGAGCGCAGAGCGCCGCAGGTGGCTGTTCTTTTGACGAACATTACAGCAACTGCGGGTA
TAGCGTGGCTCTGGGAACCAATGGGTTTACCTGGGAGCAGATTAACACATGGGAGAAGCCAATGCTGGAC
CCAGCTGTGCCCACAGGGTCCTTCATGATGGTGAACAGCTCTGGAAGGGCTTCAGGCCAGAAAGCCCATC
TTCTTCTGCCAACCTTGAAGGAGAATGACACTCACTGCATTGACTTCCATTACTACTTCTCCAGTCGAGA
TCGCTCCAGCCCGGGAGCCTTGAATGTCTACGTGAAGGTGAATGGTGGACCCCAAGGGAACCCTGTCTGG
AACGTATCTGGCGTCGTCACTGAGGGCTGGGTGAAGGCAGAGCTTGCCATCAGCACCTTCTGGCCTCATT
TCTATCAGGTGATATTTGAATCCGTCTCTTTGAAAGGTCATCCTGGTTACATCGCTGTGGACGAAGTTCG
GGTCCTTGCTCATCCATGCAGAAAAGCACCTCATTTCCTGCGACTCCAAAACGTTGAGGTGAATGTGGGG
CAGAACGCCACGTTTCAGTGCATTGCTGGTGGAAAGTGGTCCCAGCATGACAAACTTTGGCTCCAGCAAT
GGAATGGCAGAGACACAGCCCTCATGGTCACCCGGGTGGTCAACCACAGACGCTTCTCAGCCACAGTGAG
TGTGGCAGACACCTCTCAACGCAGTATCTCCAAGTATCGCTGCGTGATCCGCTCAGATGGTGGGTCTGGT
GTGTCCAACTATGCAGAGCTGATTGTGAAAGAGCCTCCCACGCCCATTGCTCCCCCGGAACTACTGGCCG
TGGGTGCCACCTACCTGTGGATTAAACCAAATGCCAACTCCATTATTGGGGATGGCCCCATCATACTGAA
GGAGGTAGAATACCGCACAACCACAGGAACCTGGGCCGAGACCCACATCGTGGACTCTCCCAACTACAAG
CTCTGGCATCTGGACCCTGATGTGGAGTATGAGATCCGGGTGCTGCTCACACGACCAGGAGAGGGGGGCA
CAGGACCACCAGGACCACCCCTAACTACCAGGACCAAGTGTGCCGATCCCGTGCATGGCCCGCAGAATGT
GGAGATTGTGGACATTCGGGCTCGGCAGCTGACCCTGCAGTGGGAACCCTTTGGCTATGCAGTGACCCGC
TGCCACAGCTACAACCTCACAGTGCAGTACCAGTACGTGTTCAACCAGCAGCAGTATGAAGCTGAAGAGG
TGATCCAGACATCTTCCCACTATACCCTTCGGGGTCTACGGCCCTTCATGACCATCAGACTGCGGCTGCT
ACTGTCCAACCCTGAGGGCCGGATGGAGAGTGAGGAGTTGGTGGTACAGACAGAAGAGGATGTTCCAGGA
GCTGTTCCTCTCGAGTCCATCCAAGGGGGTCCCTTTGAGGAGAAGATCTACATCCAGTGGAAACCTCCCA
ATGAGACCAATGGGGTCATCACACTCTATGAGATTAACTACAAGGCTGTGGGCTCACTGGATCCAAGTGC
TGACCTCTCCAGCCAGAGGGGAAAGGTGTTCAAACTCCGGAATGAAACCCACCACCTCTTTGTGGGTCTG
TACCCTGGGACTACCTACTCTTTCACCATCAAGGCCAGCACAGCCAAGGGCTTTGGACCCCCAGTCACTA
CTCGGATTGCCACCAAGATTTCAGCTCCATCAATGCCTGAATATGACGCAGATACCCCACTCAATGAAAC
AGATACAACCATCACGGTGATGCTCAAACCCGCCCAGTCCAGGGGAGCCCCAGTCAGTGTTTACCAGCTG
GTTGTCAAGGAGGAGCGACTCCAGAAGTCTCGGAGAGCAGCTGACATCATTGAGTGTTTCTCAGTACCTG
TGAGCTACCGGAACGCCTCCAACCTCGATTCGCTACACTACTTTGCTGCTGAGCTGAAGCCCTCCAACCT
GCCTGTCACCCAGCCATTTACAGTGGGAGACAACAAGACCTACAATGGCTACTGGAACCCTCCTCTCTCC
CCATTGAAGAGCTACAGCATCTACTTCCAGGCCCTCAGCAAAGCAAATGGAGAGACAAAAATCAACTGTG
TGCGTCTGGCTACAAAAGGTGCTTCCACTCAGAATTCTAACACTGTGGAGCCGGAGAAGCAGGTCGACAA
CACGGTGAAGATGGCTGGCGTGATTGCTGGCCTCCTCATGTTCATCATCATTCTCCTGGGGGTGATGCTG
ACCATCAAAAGGAGGAAGCTGGCTAAGAAGCAGAAGGAGACCCAGAGTGGAGCCCAGAGGGAGATGGGTC
CTGTGGCCTCGACTGACAAGCCTACCGCCAAGCTCGGCACCAACCGCAATGATGAAGGCTTCTCCTCCAG
CTCTCAGGATGTTAATGGATTCACAGATGGCAGCCGTGGGGAGCTGTCTCAGCCTACCCTCACCATTCAG
ACTCATCCCTACCGGACTTGTGACCCTGTAGAGATGAGCTATCCCCGGGACCAGTTCCAGCCTGCCATCC
GGGTGGCGGACCTGCTTCAACACATCACCCAGATGAAGAGAGGCCAGGGCTACGGGTTCAAGGAGGAATA
CGAGGCCTTACCAGAAGGACAGACAGCTTCGTGGGACACAGCCAAGGAAGATGAAAACCGCAATAAGAAT
CGATACGGAAACATCATATCTTATGACCACTCTCGAGTAAGGCTGTTGGTGCTGGATGGAGACCCTCACT
CAGACTACATCAATGCCAACTACATTGACGGGTACCACCGACCCCGGCACTACATTGCAACCCAAGGTCC
AATGCAAGAGACGGTGAAGGACTTTTGGAGAATGATCTGGCAGGAAAACTCTGCCAGCATCGTCATGGTC
ACAAACCTTGTGGAAGTGGGCAGGCACCCAGCGGAACACACTGTGGGAACTGCCACGCTAGGCCGTGCTG
CATCCCCCGGAATGGTGAAGTGTGTCCGATACTGGCCAGATGACACAGAGGTCTATGGAGACATTAAAGT
CACCCTAATAGAAACAGAGCCCCTGGCAGAATACGTCATCCGCACCTTCACAGTCCAGAAGAAAGGCTAC
CATGAGATCCGGGAGCTCCGCCTCTTCCACTTCACCAGCTGGCCTGACCACGGTGTTCCCTGCTATGCCA
CTGGCCTTCTGGGCTTTGTCCGCCAGGTCAAGTTTCTCAATCCCCCAGAAGCTGGGCCCATAGTGGTCCA
TTGCAGTGCTGGAGCCGGGAGGACTGGCTGCTTCATTGCGATTGACACCATGCTCGACATGGCTGAGAAT
GAAGGGGTTGTGGACATCTTCAACTGTGTGCGTGAGCTCCGGGCACAGAGGGTCAACCTGGTGCAGACAG
AGGAGCAGTACGTGTTTGTGCACGATGCCATCCTGGAAGCATGCCTCTGCGGCAATACTGCCATCCCAGT
GTGTGAGTTCCGCTCTCTCTACTACAACATCAGCAGGCTGGACCCGCAGACCAACTCCAGCCAGATCAAA
GACGAGTTTCAGACACTCAACATTGTGACACCTCGAGTGCGGCCTGAAGACTGCAGCATTGGGCTCTTAC
CCCGGAACCATGATAAGAATCGGAGCATGGATGTCCTGCCTCTGGACCGCTGTCTACCCTTCCTCATCTC
AGTAGATGGAGAGTCCAGCAACTACATCAATGCAGCACTGATGGATAGCCACAAGCAGCCTGCCGCCTTC
GTGGTCACCCAGCATCCTCTACCCAACACGGTGGCAGACTTCTGGAGGCTGGTGTTTGATTATAATTGTT
CATCTGTGGTGATGCTGAACGAGATGGATACTGCTCAGCTCTGTATGCAGTACTGGCCTGAGAAGACCTC
CGGGTGTTATGGTCCCATCCAGGTGGAGTTTGTCTCTGCAGACATCGATGAGGACATCATCCACAGAATC
TTCCGGATCTGTAACATGGCTCGGCCACAGGATGGTTATCGTATTGTCCAGCACCTCCAGTACATCGGCT
GGCCTGCATACCGGGACACGCCCCCCTCTAAGCGCTCTCTGCTCAAAGTGGTCCGACGGCTGGAGAAATG
GCAGGAGCAATACGACGGAAGAGAGGGGCGCACTGTGGTCCACTGCCTAAATGGGGGAGGCCGCAGTGGA
ACCTTCTGTGCTATCTGCAGTGTGTGTGAGATGATCCAGCAGCAGAACATTATTGACGTGTTCCACATTG
TGAAAACCCTCCGCAACAACAAGTCCAACATGGTGGAGACGCTGGAACAGTATAAATTTGTATATGAGGT
GGCACTGGAATATTTAAGCTCCTTTTAG

Translation (1455 aa):
MGSLGGLALCLLRLLLLGLQRPPLPGAGAQSAAGGCSFDEHYSNCGYSVALGTNGFTWEQINTWEKPMLD
PAVPTGSFMMVNSSGRASGQKAHLLLPTLKENDTHCIDFHYYFSSRDRSSPGALNVYVKVNGGPQGNPVW
NVSGVVTEGWVKAELAISTFWPHFYQVIFESVSLKGHPGYIAVDEVRVLAHPCRKAPHFLRLQNVEVNVG
QNATFQCIAGGKWSQHDKLWLQQWNGRDTALMVTRVVNHRRFSATVSVADTSQRSISKYRCVIRSDGGSG
VSNYAELIVKEPPTPIAPPELLAVGATYLWIKPNANSIIGDGPIILKEVEYRTTTGTWAETHIVDSPNYK
LWHLDPDVEYEIRVLLTRPGEGGTGPPGPPLTTRTKCADPVHGPQNVEIVDIRARQLTLQWEPFGYAVTR
CHSYNLTVQYQYVFNQQQYEAEEVIQTSSHYTLRGLRPFMTIRLRLLLSNPEGRMESEELVVQTEEDVPG
AVPLESIQGGPFEEKIYIQWKPPNETNGVITLYEINYKAVGSLDPSADLSSQRGKVFKLRNETHHLFVGL
YPGTTYSFTIKASTAKGFGPPVTTRIATKISAPSMPEYDADTPLNETDTTITVMLKPAQSRGAPVSVYQL
VVKEERLQKSRRAADIIECFSVPVSYRNASNLDSLHYFAAELKPSNLPVTQPFTVGDNKTYNGYWNPPLS
PLKSYSIYFQALSKANGETKINCVRLATKGASTQNSNTVEPEKQVDNTVKMAGVIAGLLMFIIILLGVML
TIKRRKLAKKQKETQSGAQREMGPVASTDKPTAKLGTNRNDEGFSSSSQDVNGFTDGSRGELSQPTLTIQ
THPYRTCDPVEMSYPRDQFQPAIRVADLLQHITQMKRGQGYGFKEEYEALPEGQTASWDTAKEDENRNKN
RYGNIISYDHSRVRLLVLDGDPHSDYINANYIDGYHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMV
TNLVEVGRHPAEHTVGTATLGRAASPGMVKCVRYWPDDTEVYGDIKVTLIETEPLAEYVIRTFTVQKKGY
HEIRELRLFHFTSWPDHGVPCYATGLLGFVRQVKFLNPPEAGPIVVHCSAGAGRTGCFIAIDTMLDMAEN
EGVVDIFNCVRELRAQRVNLVQTEEQYVFVHDAILEACLCGNTAIPVCEFRSLYYNISRLDPQTNSSQIK
DEFQTLNIVTPRVRPEDCSIGLLPRNHDKNRSMDVLPLDRCLPFLISVDGESSNYINAALMDSHKQPAAF
VVTQHPLPNTVADFWRLVFDYNCSSVVMLNEMDTAQLCMQYWPEKTSGCYGPIQVEFVSADIDEDIIHRI
FRICNMARPQDGYRIVQHLQYIGWPAYRDTPPSKRSLLKVVRRLEKWQEQYDGREGRTVVHCLNGGGRSG
TFCAICSVCEMIQQQNIIDVFHIVKTLRNNKSNMVETLEQYKFVYEVALEYLSSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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