CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS71183.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
71183.1 |
Public |
Mus musculus |
2 |
Ptprt |
23 |
108 |
98 |
|
Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 71183.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENSMUST00000109443.7 |
ENSMUSP00000105069.1 |
Accepted |
alive |
|
|
|
NCBI |
NM_001291150.1 |
NP_001278079.1 |
Updated |
not alive |
|
|
|
NCBI |
NM_001291150.2 |
NP_001278079.1 |
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001278079.1 |
1445 |
Q99M80-3 |
1445 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 71183.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4338 nt): ATGGGGAGCCTTGGCGGGCTCGCCCTCTGCCTGCTCCGGCTCCTGCTCCTGGGGCTGCAGCGGCCGCCGT TGCCCGGCGCCGGAGCGCAGAGCGCCGCAGGTGGCTGTTCTTTTGACGAACATTACAGCAACTGCGGGTA TAGCGTGGCTCTGGGAACCAATGGGTTTACCTGGGAGCAGATTAACACATGGGAGAAGCCAATGCTGGAC CCAGCTGTGCCCACAGGGTCCTTCATGATGGTGAACAGCTCTGGAAGGGCTTCAGGCCAGAAAGCCCATC TTCTTCTGCCAACCTTGAAGGAGAATGACACTCACTGCATTGACTTCCATTACTACTTCTCCAGTCGAGA TCGCTCCAGCCCGGGAGCCTTGAATGTCTACGTGAAGGTGAATGGTGGACCCCAAGGGAACCCTGTCTGG AACGTATCTGGCGTCGTCACTGAGGGCTGGGTGAAGGCAGAGCTTGCCATCAGCACCTTCTGGCCTCATT TCTATCAGGTGATATTTGAATCCGTCTCTTTGAAAGGTCATCCTGGTTACATCGCTGTGGACGAAGTTCG GGTCCTTGCTCATCCATGCAGAAAAGCACCTCATTTCCTGCGACTCCAAAACGTTGAGGTGAATGTGGGG CAGAACGCCACGTTTCAGTGCATTGCTGGTGGAAAGTGGTCCCAGCATGACAAACTTTGGCTCCAGCAAT GGAATGGCAGAGACACAGCCCTCATGGTCACCCGGGTGGTCAACCACAGACGCTTCTCAGCCACAGTGAG TGTGGCAGACACCTCTCAACGCAGTATCTCCAAGTATCGCTGCGTGATCCGCTCAGATGGTGGGTCTGGT GTGTCCAACTATGCAGAGCTGATTGTGAAAGAGCCTCCCACGCCCATTGCTCCCCCGGAACTACTGGCCG TGGGTGCCACCTACCTGTGGATTAAACCAAATGCCAACTCCATTATTGGGGATGGCCCCATCATACTGAA GGAGGTAGAATACCGCACAACCACAGGAACCTGGGCCGAGACCCACATCGTGGACTCTCCCAACTACAAG CTCTGGCATCTGGACCCTGATGTGGAGTATGAGATCCGGGTGCTGCTCACACGACCAGGAGAGGGGGGCA CAGGACCACCAGGACCACCCCTAACTACCAGGACCAAGTGTGCCGATCCCGTGCATGGCCCGCAGAATGT GGAGATTGTGGACATTCGGGCTCGGCAGCTGACCCTGCAGTGGGAACCCTTTGGCTATGCAGTGACCCGC TGCCACAGCTACAACCTCACAGTGCAGTACCAGTACGTGTTCAACCAGCAGCAGTATGAAGCTGAAGAGG TGATCCAGACATCTTCCCACTATACCCTTCGGGGTCTACGGCCCTTCATGACCATCAGACTGCGGCTGCT ACTGTCCAACCCTGAGGGCCGGATGGAGAGTGAGGAGTTGGTGGTACAGACAGAAGAGGATGTTCCAGGA GCTGTTCCTCTCGAGTCCATCCAAGGGGGTCCCTTTGAGGAGAAGATCTACATCCAGTGGAAACCTCCCA ATGAGACCAATGGGGTCATCACACTCTATGAGATTAACTACAAGGCTGTGGGCTCACTGGATCCAAGTGC TGACCTCTCCAGCCAGAGGGGAAAGGTGTTCAAACTCCGGAATGAAACCCACCACCTCTTTGTGGGTCTG TACCCTGGGACTACCTACTCTTTCACCATCAAGGCCAGCACAGCCAAGGGCTTTGGACCCCCAGTCACTA CTCGGATTGCCACCAAGATTTCAGCTCCATCAATGCCTGAATATGACGCAGATACCCCACTCAATGAAAC AGATACAACCATCACGGTGATGCTCAAACCCGCCCAGTCCAGGGGAGCCCCAGTCAGTGTTTACCAGCTG GTTGTCAAGGAGGAGCGACTCCAGAAGTCTCGGAGAGCAGCTGACATCATTGAGTGTTTCTCAGTACCTG TGAGCTACCGGAACGCCTCCAACCTCGATTCGCTACACTACTTTGCTGCTGAGCTGAAGCCCTCCAACCT GCCTGTCACCCAGCCATTTACAGTGGGAGACAACAAGACCTACAATGGCTACTGGAACCCTCCTCTCTCC CCATTGAAGAGCTACAGCATCTACTTCCAGGCCCTCAGCAAAGCAAATGGAGAGACAAAAATCAACTGTG TGCGTCTGGCTACAAAAGGTGCTTCCACTCAGAATTCTAACACTGTGGAGCCGGAGAAGCAGGTCGACAA CACGGTGAAGATGGCTGGCGTGATTGCTGGCCTCCTCATGTTCATCATCATTCTCCTGGGGGTGATGCTG ACCATCAAAAGGAGAAGAAATGCTTATTCGTACTCCTATTACTTGAAGCTGGCTAAGAAGCAGAAGGAGA CCCAGAGTGGAGCCCAGAGGGAGATGGGTCCTGTGGCCTCGACTGACAAGCCTACCGCCAAGCTCGGCAC CAACCGCAATGATGAAGGCTTCTCCTCCAGCTCTCAGGATGTTAATGGATTCACAGATGGCAGCCGTGGG GAGCTGTCTCAGCCTACCCTCACCATTCAGACTCATCCCTACCGGACTTGTGACCCTGTAGAGATGAGCT ATCCCCGGGACCAGTTCCAGCCTGCCATCCGGGTGGCGGACCTGCTTCAACACATCACCCAGATGAAGAG AGGCCAGGGCTACGGGTTCAAGGAGGAATACGAGGCCTTACCAGAAGGACAGACAGCTTCGTGGGACACA GCCAAGGAAGATGAAAACCGCAATAAGAATCGATACGGAAACATCATATCTTATGACCACTCTCGAGTAA GGCTGTTGGTGCTGGATGGAGACCCTCACTCAGACTACATCAATGCCAACTACATTGACGGGTACCACCG ACCCCGGCACTACATTGCAACCCAAGGTCCAATGCAAGAGACGGTGAAGGACTTTTGGAGAATGATCTGG CAGGAAAACTCTGCCAGCATCGTCATGGTCACAAACCTTGTGGAAGTGGGCAGGGTGAAGTGTGTCCGAT ACTGGCCAGATGACACAGAGGTCTATGGAGACATTAAAGTCACCCTAATAGAAACAGAGCCCCTGGCAGA ATACGTCATCCGCACCTTCACAGTCCAGAAGAAAGGCTACCATGAGATCCGGGAGCTCCGCCTCTTCCAC TTCACCAGCTGGCCTGACCACGGTGTTCCCTGCTATGCCACTGGCCTTCTGGGCTTTGTCCGCCAGGTCA AGTTTCTCAATCCCCCAGAAGCTGGGCCCATAGTGGTCCATTGCAGTGCTGGAGCCGGGAGGACTGGCTG CTTCATTGCGATTGACACCATGCTCGACATGGCTGAGAATGAAGGGGTTGTGGACATCTTCAACTGTGTG CGTGAGCTCCGGGCACAGAGGGTCAACCTGGTGCAGACAGAGGAGCAGTACGTGTTTGTGCACGATGCCA TCCTGGAAGCATGCCTCTGCGGCAATACTGCCATCCCAGTGTGTGAGTTCCGCTCTCTCTACTACAACAT CAGCAGGCTGGACCCGCAGACCAACTCCAGCCAGATCAAAGACGAGTTTCAGACACTCAACATTGTGACA CCTCGAGTGCGGCCTGAAGACTGCAGCATTGGGCTCTTACCCCGGAACCATGATAAGAATCGGAGCATGG ATGTCCTGCCTCTGGACCGCTGTCTACCCTTCCTCATCTCAGTAGATGGAGAGTCCAGCAACTACATCAA TGCAGCACTGATGGATAGCCACAAGCAGCCTGCCGCCTTCGTGGTCACCCAGCATCCTCTACCCAACACG GTGGCAGACTTCTGGAGGCTGGTGTTTGATTATAATTGTTCATCTGTGGTGATGCTGAACGAGATGGATA CTGCTCAGCTCTGTATGCAGTACTGGCCTGAGAAGACCTCCGGGTGTTATGGTCCCATCCAGGTGGAGTT TGTCTCTGCAGACATCGATGAGGACATCATCCACAGAATCTTCCGGATCTGTAACATGGCTCGGCCACAG GATGGTTATCGTATTGTCCAGCACCTCCAGTACATCGGCTGGCCTGCATACCGGGACACGCCCCCCTCTA AGCGCTCTCTGCTCAAAGTGGTCCGACGGCTGGAGAAATGGCAGGAGCAATACGACGGAAGAGAGGGGCG CACTGTGGTCCACTGCCTAAATGGGGGAGGCCGCAGTGGAACCTTCTGTGCTATCTGCAGTGTGTGTGAG ATGATCCAGCAGCAGAACATTATTGACGTGTTCCACATTGTGAAAACCCTCCGCAACAACAAGTCCAACA TGGTGGAGACGCTGGAACAGTATAAATTTGTATATGAGGTGGCACTGGAATATTTAAGCTCCTTTTAG
Translation (1445 aa): MGSLGGLALCLLRLLLLGLQRPPLPGAGAQSAAGGCSFDEHYSNCGYSVALGTNGFTWEQINTWEKPMLD PAVPTGSFMMVNSSGRASGQKAHLLLPTLKENDTHCIDFHYYFSSRDRSSPGALNVYVKVNGGPQGNPVW NVSGVVTEGWVKAELAISTFWPHFYQVIFESVSLKGHPGYIAVDEVRVLAHPCRKAPHFLRLQNVEVNVG QNATFQCIAGGKWSQHDKLWLQQWNGRDTALMVTRVVNHRRFSATVSVADTSQRSISKYRCVIRSDGGSG VSNYAELIVKEPPTPIAPPELLAVGATYLWIKPNANSIIGDGPIILKEVEYRTTTGTWAETHIVDSPNYK LWHLDPDVEYEIRVLLTRPGEGGTGPPGPPLTTRTKCADPVHGPQNVEIVDIRARQLTLQWEPFGYAVTR CHSYNLTVQYQYVFNQQQYEAEEVIQTSSHYTLRGLRPFMTIRLRLLLSNPEGRMESEELVVQTEEDVPG AVPLESIQGGPFEEKIYIQWKPPNETNGVITLYEINYKAVGSLDPSADLSSQRGKVFKLRNETHHLFVGL YPGTTYSFTIKASTAKGFGPPVTTRIATKISAPSMPEYDADTPLNETDTTITVMLKPAQSRGAPVSVYQL VVKEERLQKSRRAADIIECFSVPVSYRNASNLDSLHYFAAELKPSNLPVTQPFTVGDNKTYNGYWNPPLS PLKSYSIYFQALSKANGETKINCVRLATKGASTQNSNTVEPEKQVDNTVKMAGVIAGLLMFIIILLGVML TIKRRRNAYSYSYYLKLAKKQKETQSGAQREMGPVASTDKPTAKLGTNRNDEGFSSSSQDVNGFTDGSRG ELSQPTLTIQTHPYRTCDPVEMSYPRDQFQPAIRVADLLQHITQMKRGQGYGFKEEYEALPEGQTASWDT AKEDENRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANYIDGYHRPRHYIATQGPMQETVKDFWRMIW QENSASIVMVTNLVEVGRVKCVRYWPDDTEVYGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIRELRLFH FTSWPDHGVPCYATGLLGFVRQVKFLNPPEAGPIVVHCSAGAGRTGCFIAIDTMLDMAENEGVVDIFNCV RELRAQRVNLVQTEEQYVFVHDAILEACLCGNTAIPVCEFRSLYYNISRLDPQTNSSQIKDEFQTLNIVT PRVRPEDCSIGLLPRNHDKNRSMDVLPLDRCLPFLISVDGESSNYINAALMDSHKQPAAFVVTQHPLPNT VADFWRLVFDYNCSSVVMLNEMDTAQLCMQYWPEKTSGCYGPIQVEFVSADIDEDIIHRIFRICNMARPQ DGYRIVQHLQYIGWPAYRDTPPSKRSLLKVVRRLEKWQEQYDGREGRTVVHCLNGGGRSGTFCAICSVCE MIQQQNIIDVFHIVKTLRNNKSNMVETLEQYKFVYEVALEYLSSF
|