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Report for CCDS71249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71249.1 Public Mus musculus 3 Schip1 23 108 98 CCDS HistoryNCBI Gene:30953Re-query CCDS DB by CCDS ID:71249.1Re-query CCDS DB by GeneID:30953See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182719.7 ENSMUSP00000138207.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182719.7Link to Ensembl Protein Viewer:ENSMUSP00000138207.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182719Re-query CCDS DB by Protein ID:ENSMUSP00000138207
Original member Current member EBI ENSMUST00000182532.7 ENSMUSP00000138245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182532.7Link to Ensembl Protein Viewer:ENSMUSP00000138245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182532Re-query CCDS DB by Protein ID:ENSMUSP00000138245
Original member Current member NCBI NM_001282044.1 NP_001268973.1 Accepted alive Link to Nucleotide Sequence:NM_001282044.1Link to Protein Sequence:NP_001268973.1Re-query CCDS DB by Nucleotide ID:NM_001282044Re-query CCDS DB by Protein ID:NP_001268973Link to BLAST:NP_001268973.1
Original member Current member NCBI NM_001282045.1 NP_001268974.1 Accepted alive Link to Nucleotide Sequence:NM_001282045.1Link to Protein Sequence:NP_001268974.1Re-query CCDS DB by Nucleotide ID:NM_001282045Re-query CCDS DB by Protein ID:NP_001268974Link to BLAST:NP_001268974.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268973.1 456 P0DPB4-2 456 100% 0 0
NP_001268974.1 456 P0DPB4-2 456 100% 0 0

Chromosomal Locations for CCDS 71249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 68494592 68495257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68596150 68596268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68616440 68616557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68617611 68617808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68618596 68618719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68620973 68621066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68625807 68625858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGATCTAGGCAGTGACGCCGGCAGCAGCAGCAGCAGCCGCGCCAGCTCACAATCCAACTCCACCAAAG
TGACCCCTTGCTCCGAGTGCAAATCCTCATCGTCGCCGGGGGGTAGCTTGGACTTGGTGTCTGCTCTGGA
AGACTATGAAGAGCCCTTCCCGGTCTACCAGAAGAAGGTGATTGATGAGTGGGCTCCGGAGGAGGACGGG
GAGGAGGAGGAAGAGGAGGACGATCGAGGGTATCGGGATGACGGCTGTCCGGCCCGGGAGCCGGGGGACG
TGAGCGCCAGGATCGGCAGCAGCGGCAGCGGGAGCAGGAGCGCCGCCACCACCATGCCGTCCCCGATGCC
TAACGGCAACCTCCATCCGCACGACCCTCAAGACCTCAGGCACAATGGCAACGTGGTGGTAGCTGGCCGG
CCGAACGCCTCTCGGGTTCCCCGGCGACCCATCCAGAAGACCCAGCCTCCAGGGAGCCGGCGCGGAGGCC
GAAACCGGGCATCTGGGGGCCTCTGCCTTCAGCCACCGGACGGCGGGACGCGGGTCCCGGAAGAACCCCC
TGCGCCCCCAATGGACTGGGAGGCATTGGAAAAGCATCTGGCCGGGCTGCAGTTCCGGGAGCAGGAGGTG
CGAAACCAGGGTCAGGCGAGGACCAACTCCACCTCTGCACAGAAGAATGAGAGAGAGTCTATCAGACAGA
AGTTGGCACTCGGAAGCTTCTTTGACGATGGCCCAGGAATCTATACCAGCTGCAGCAAAAGTGGGAAGCC
AAGCCTTTCTGCAAGACTACAGAGCGGGATGAACCTCCAGATATGCTTTGTCAATGACAGCGGCAGTGAC
AAGGACAGCGATGCAGATGACAGTAAGACGGAAACCAGCTTGGACACGCCCTTGTCCCCCATGAGCAAGC
AGAGTTCTTCCTATTCGGATAGAGACACAACTGAGGAGGAGTCTGAATCCCTGGATGACATGGACTTCCT
CACAAGGCAAAAGAAGCTACAAGCTGAAGCCAAAATGGCTCTGGCCATGGCCAAACCAATGGCCAAAATG
CAAGTAGAAGTGGAAAAACAGAACAGGAAAAAGTCTCCCGTCGCTGATCTTCTCCCACACATGCCTCACA
TAAGCGAATGTTTGATGAAAAGAAGCTTAAAGCCCACCGACCTGAGAGACATGACTATCGGGCAGCTACA
AGTGATCGTCAATGACCTCCACTCCCAGATTGAAAGTTTGAATGAAGAGTTGGTCCAGCTGCTCCTTATT
CGAGATGAGCTGCACACAGAACAAGATGCCATGCTGGTGGACATTGAAGACTTGACTAGACACGCTGAGA
GTCAGCAGAAGCACATGGCTGAGAAAATGCCCGCGAAGTGA

Translation (456 aa):
MDLGSDAGSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDG
EEEEEEDDRGYRDDGCPAREPGDVSARIGSSGSGSRSAATTMPSPMPNGNLHPHDPQDLRHNGNVVVAGR
PNASRVPRRPIQKTQPPGSRRGGRNRASGGLCLQPPDGGTRVPEEPPAPPMDWEALEKHLAGLQFREQEV
RNQGQARTNSTSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSARLQSGMNLQICFVNDSGSD
KDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMAKPMAKM
QVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTDLRDMTIGQLQVIVNDLHSQIESLNEELVQLLLI
RDELHTEQDAMLVDIEDLTRHAESQQKHMAEKMPAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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