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Report for CCDS7160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7160.1 Public Homo sapiens 10 WAC 24 110 108 CCDS HistoryNCBI Gene:51322Re-query CCDS DB by CCDS ID:7160.1Re-query CCDS DB by GeneID:51322See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7160.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347934.8 ENSP00000311106.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347934.8Link to Ensembl Protein Viewer:ENSP00000311106.4Re-query CCDS DB by Nucleotide ID:ENST00000347934Re-query CCDS DB by Protein ID:ENSP00000311106
Original member Current member NCBI NM_100486.4 NP_567823.1 Accepted alive Link to Nucleotide Sequence:NM_100486.4Link to Protein Sequence:NP_567823.1Re-query CCDS DB by Nucleotide ID:NM_100486Re-query CCDS DB by Protein ID:NP_567823Link to BLAST:NP_567823.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_567823.1 544 Q9BTA9-5 544 100% 0 0

Chromosomal Locations for CCDS 7160.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 28533580 28533620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28533998 28534034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28535562 28535757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28583399 28583505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28589736 28589851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28590720 28590832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28608186 28608431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28610699 28610821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28611774 28611922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28614567 28614685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28616173 28616362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28617657 28617784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28619537 28619606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGGTAATGTATGCGAGGAAACAGCAGAGACTCAGTGATGGCTGTCACGACCGGAGGGGGGACTCGCAGC
CTTACCAGGCACTTAAGTATTCATCGAAGAGTCACCCCAGTAGCGGTGATCACAGACATGAAAAGATGCG
AGACGCCGGAGATCCTTCACCACCAAATAAAATGTTGCGGAGATCTGATAGTCCTGAAAACAAATACAGT
GACAGCACAGGTCACAGTAAGGCCAAAAATGTGCATACTCACAGAGTTAGAGAGAGGGATGGTGGGACCA
GTTACTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTCTAATCC
AAGCAATAACCCAAGCAAAACTTCAGATGCACCTTATGATTCTGCAGATGACTGGTCTGAGCATATTAGC
TCTTCTGGGAAAAAGTACTACTACAATTGTCGAACAGAAGTTTCACAATGGGAAAAACCAAAAGAGTGGC
TTGAAAGAGAACAGAGACAAAAAGAAGCAAACAAGATGGCAGTCAACAGCTTCCCAAAAGATAGGGATTA
CAGAAGAGAGGTGATGCAAGCAACAGCCACTAGTGGGTTTGCCAGTGGAAAATCTACATCAGGAGACAAA
CCCGTATCACATTCTTGCACAACTCCTTCCACGTCTTCTGCCTCTGGACTGAACCCCACATCTGCACCTC
CAACATCTGCTTCAGCGGTCCCTGTTTCTCCTGTTCCACAGTCGCCAATACCTCCCTTACTTCAGGACCC
AAATCTTCTTAGACAATTGCTTCCTGCTTTGCAAGCCACGCTGCAGCTTAATAATTCTAATGTGGACATA
TCTAAAATAAATGAAGTTCTTACAGCAGCTGTGACACAAGCCTCACTGCAGTCTATAATTCATAAGTTTC
TTACTGCTGGACCATCTGCTTTCAACATAACGTCTCTGATTTCTCAAGCTGCTCAGCTCTCTACACAAGC
CCAGCCATCTAATCAGTCTCCGATGTCTTTAACATCTGATGCGTCATCCCCAAGATCATATGTTTCTCCA
AGAATAAGCACACCTCAAACTAACACAGTCCCTATCAAACCTTTGATCAGTACTCCTCCTGTTTCATCAC
AGCCAAAGGTTAGTACTCCAGTAGTTAAGCAAGGACCAGTGTCACAGTCAGCCACACAGCAGCCTGTAAC
TGCTGACAAGCAGCAAGGTCATGAACCTGTCTCTCCTCGAAGTCTTCAGCGCTCAAGTAGCCAGAGAAGT
CCATCACCTGGTCCCAATCATACTTCTAATAGTAGTAATGCATCAAATGCAACAGTTGTACCACAGAATT
CTTCTGCCCGATCCACGTGTTCATTAACGCCTGCACTAGCAGCACACTTCAGTGAAAATCTCATAAAACA
CGTTCAAGGATGGCCTGCAGATCATGCAGAGAAGCAGGCATCAAGATTACGCGAAGAAGCGCATAACATG
GGAACTATTCACATGTCCGAAATTTGTACTGAATTAAAAAATTTAAGATCTTTAGTCCGAGTATGTGAAA
TTCAAGCAACTTTGCGAGAGCAAAGGATACTATTTTTGAGACAACAAATTAAGGAACTTGAAAAGCTAAA
AAATCAGAATTCCTTCATGGTGTGA

Translation (544 aa):
MVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKMLRRSDSPENKYS
DSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDWSEHIS
SSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNSFPKDRDYRREVMQATATSGFASGKSTSGDK
PVSHSCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIPPLLQDPNLLRQLLPALQATLQLNNSNVDI
SKINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLISQAAQLSTQAQPSNQSPMSLTSDASSPRSYVSP
RISTPQTNTVPIKPLISTPPVSSQPKVSTPVVKQGPVSQSATQQPVTADKQQGHEPVSPRSLQRSSSQRS
PSPGPNHTSNSSNASNATVVPQNSSARSTCSLTPALAAHFSENLIKHVQGWPADHAEKQASRLREEAHNM
GTIHMSEICTELKNLRSLVRVCEIQATLREQRILFLRQQIKELEKLKNQNSFMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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