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Report for CCDS71968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71968.1 Public Mus musculus 7 Syngr4 23 108 98 CCDS HistoryNCBI Gene:58867Re-query CCDS DB by CCDS ID:71968.1Re-query CCDS DB by GeneID:58867See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120299.3 ENSMUSP00000113955.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120299.3Link to Ensembl Protein Viewer:ENSMUSP00000113955.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120299Re-query CCDS DB by Protein ID:ENSMUSP00000113955
Original member Current member NCBI NM_001291064.1 NP_001277993.1 Accepted alive Link to Nucleotide Sequence:NM_001291064.1Link to Protein Sequence:NP_001277993.1Re-query CCDS DB by Nucleotide ID:NM_001291064Re-query CCDS DB by Protein ID:NP_001277993Link to BLAST:NP_001277993.1

Chromosomal Locations for CCDS 71968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45887046 45887125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45888612 45888849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45895691 45895783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGCACCTCCCTGAAAGCCTCCACGACCTGGCAGACAATGAGACTGTGCGCTTTCTGAGGAGACCAAAGA
GCATCTCAAGGATCTTCGGAGGGGTCTTTTCCCTGGTCATCTTTTCCTCTCTACTAACTGATGGTTACCA
GAACAGAACAGAGTCTCCTCAGCTCCGCTGTGTCCTCAACAGCAACCACATGGCCTGTAGCTTTGCAGTA
GGAGCTGGCTTCCTGTCCTTTCTCAGCTGCTTGGTCTTCCTTGCCATAGATGCCTATGAGAGGCGCCTCG
TGGGCACCCGCTTTAAGATAGCCTTCCAGCTCTTGGACTTCATTCTGGCTGATACTCCAGGCCTACCTAG
CCTTCCAGGACCTCCGAGACGAGGCTCCAGTCCCCTACAAGCGCTCCCTGGAGGAGGGTAG

Translation (136 aa):
MHLPESLHDLADNETVRFLRRPKSISRIFGGVFSLVIFSSLLTDGYQNRTESPQLRCVLNSNHMACSFAV
GAGFLSFLSCLVFLAIDAYERRLVGTRFKIAFQLLDFILADTPGLPSLPGPPRRGSSPLQALPGGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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