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Report for CCDS72069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72069.1 Public Mus musculus 7 Sct 23 108 98 CCDS HistoryNCBI Gene:20287Re-query CCDS DB by CCDS ID:72069.1Re-query CCDS DB by GeneID:20287See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046156.12 ENSMUSP00000041519.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046156.12Link to Ensembl Protein Viewer:ENSMUSP00000041519.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046156Re-query CCDS DB by Protein ID:ENSMUSP00000041519
Original member NCBI NM_001287171.1 NP_001274100.1 Updated not alive Link to Nucleotide Sequence:NM_001287171.1Link to Protein Sequence:NP_001274100.1Re-query CCDS DB by Nucleotide ID:NM_001287171Re-query CCDS DB by Protein ID:NP_001274100
Current member NCBI NM_001287171.2 NP_001274100.1 Accepted alive Link to Nucleotide Sequence:NM_001287171.2Link to Protein Sequence:NP_001274100.1Re-query CCDS DB by Nucleotide ID:NM_001287171Re-query CCDS DB by Protein ID:NP_001274100Link to BLAST:NP_001274100.1

Chromosomal Locations for CCDS 72069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141278410 141278539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141278618 141278722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141278833 141278934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141279016 141279098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGAGCCTCCGCTGCCCACGCCGATGCTACTGCTGTTGCTGCTGCTGCTCTCCAGTTCCGCCGCGCTCC
CTGCACCTCCCAGGACCCCAAGACACTCAGACGGAATGTTCACCAGCGAGCTCAGCCGCTTGCAGGACAG
TGCCAGGCTGCAGCGCCTGCTGCAGGGTCTGGTGGGGAAGCGCAGCGAGCAGGACACAGAAAATATCCCA
GAGAACAGCCTGGCCCGGTCCAAGCCCTTAGAGGACCAGCTCTGCTTGCTGTGGTCGAACACTCAGACCC
TACAGGACTGTCCCCTCTCCTTCCACAGGCTTCTGCCCAGGCTGTCCCTGGATGGGTCCCTGTCTCTCTG
GCTGCCTCCTGGACCAAGGTCTGCTGTTGATCGTTCAGAGTGGACTGAAACAACCAGGCCACCCAGATGA

Translation (139 aa):
MEPPLPTPMLLLLLLLLSSSAALPAPPRTPRHSDGMFTSELSRLQDSARLQRLLQGLVGKRSEQDTENIP
ENSLARSKPLEDQLCLLWSNTQTLQDCPLSFHRLLPRLSLDGSLSLWLPPGPRSAVDRSEWTETTRPPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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