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Report for CCDS72304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72304.1 Public Mus musculus 9 Cacna2d2 23 108 98 CCDS HistoryNCBI Gene:56808Re-query CCDS DB by CCDS ID:72304.1Re-query CCDS DB by GeneID:56808See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168532.7 ENSMUSP00000132512.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168532.7Link to Ensembl Protein Viewer:ENSMUSP00000132512.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168532Re-query CCDS DB by Protein ID:ENSMUSP00000132512
Original member Current member NCBI NM_001174047.1 NP_001167518.1 Accepted alive Link to Nucleotide Sequence:NM_001174047.1Link to Protein Sequence:NP_001167518.1Re-query CCDS DB by Nucleotide ID:NM_001174047Re-query CCDS DB by Protein ID:NP_001167518Link to BLAST:NP_001167518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167518.1 1156 Q6PHS9-3 1156 100% 0 0

Chromosomal Locations for CCDS 72304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107400069 107400283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107426053 107426134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107465553 107465669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107497460 107497519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107505948 107505992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107509195 107509336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107512001 107512132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107512303 107512360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107513054 107513104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107513233 107513332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107513473 107513631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107513835 107513942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107514045 107514123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107514632 107514681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107514860 107514949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107515151 107515222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107515419 107515493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107517095 107517169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107517251 107517322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107517413 107517484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107517591 107517652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107518193 107518269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107519179 107519199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107522123 107522183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107524095 107524192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107524398 107524488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107524612 107524674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107524831 107524934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107525157 107525255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107525344 107525432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107525613 107525660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107525901 107525972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107526063 107526215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107526343 107526395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107526485 107526540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107526688 107526814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107526937 107527046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107527148 107527236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107527321 107527464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3471 nt):
ATGGCGGTGCCGGCTCGGACCTGCGGCGCTTCTTGGCCCGGCCCGGTGCGGACCGCTCGCCCCTGGCCCG
GTCGCGGCCCCCGGCCCTGCCCTGACCCCCGGGGCCCAGCGTCCGGGCCCGCACGCCCGCTCTTGCTCTT
GCTGCCGCCTCTGTTGCTTTTACCGCTGCTCACCGCCCCCGGCGCCTCTGCCTACAGCTTCCCCCAGCAG
CACACGATGCAGCACTGGGCCCGGCGCCTGGAGCAGGAGATTGACGGTGTGATGCGGATTTTTGGAGGCG
TGCAGCAGCTCCGAGAGATCTACAAGGACAATCGGAACCTGTTTGAAGTGCAGGAGAATGAACCACAGAA
ATTGGTGGAGAAAGTGGCAGGGGACATCGAGAGCCTGCTGGACAGGAAGGTCCAGGCCCTGAAGAGACTG
GCTGACGCTGCAGAGAATTTCCAGAAAGCCCATCGCTGGCAGGACAACATCAAGGAGGAAGACATCATGT
ACTACGATGCCAAGGCTGACGCCGAGCTGGATGACCCTGAGAGTGAAGATATGGAGAGGGGATCCAAGAC
CAGCGCCTTAAGGCTGGACTTCATCGAGGACCCAAACTTCAAGAACAAAGTCAACTATTCATACACGGCT
GTGCAGATCCCCACAGACATCTACAAAGGCTCTACCGTCATCCTCAATGAGCTTAACTGGACAGAGGCCC
TGGAGAACGTCTTCATTGAGAACCGTAGGCAAGACCCTACACTGTTGTGGCAAGTCTTTGGCAGTGCCAC
GGGAGTCACTCGCTATTACCCAGCCACACCATGGCGAGCCCCCAAGAAGATTGACCTGTACGATGTCAGA
AGACGACCCTGGTATATACAGGGGGCCTCATCACCCAAGGACATGGTCATCATTGTGGATGTGAGTGGCA
GCGTGAGCGGCCTGACTCTGAAGCTGATGAAGACGTCCGTCTGTGAGATGCTAGACACGCTCTCTGATGA
TGACTATGTGAACGTGGCCTCATTCAACGAGAAGGCGCAGCCTGTGTCTTGCTTCACACACCTGGTGCAG
GCCAATGTGCGTAACAAGAAGGTGTTCAAGGAAGCTGTGCAGGGCATGGTGGCCAAGGGCACCACAGGCT
ACAAGGCCGGCTTTGAGTATGCCTTTGACCAGCTACAGAATTCCAACATCACGCGGGCTAACTGCAATAA
GATGATCATGATGTTCACGGATGGGGGTGAGGATCGCGTGCAGGATGTCTTCGAAAAGTACAATTGGCCC
AATCGGACGGTACGTGTGTTCACGTTCTCCGTAGGACAGCATAACTATGATGTCACACCCTTGCAGTGGA
TGGCCTGTACTAACAAAGGTTACTATTTTGAGATCCCTTCCATCGGAGCCATCCGCATCAACACACAGGA
ATACCTGGATGTGCTGGGTAGGCCCATGGTACTGGCAGGCAAGGACGCCAAGCAAGTGCAATGGACAAAC
GTGTATGAAGATGCACTGGGGCTGGGGTTGGTGGTAACAGGAACTCTCCCTGTTTTCAACCTGACACAGG
ATGGCCCTGGGGAAAAGAAGAACCAGTTAATCCTGGGTGTCATGGGCATCGATGTGGCCTTGAATGACAT
CAAAAGGCTGACTCCCAACTACACACTCGGCGCCAATGGCTATGTGTTCGCCATCGACCTGAACGGCTAC
GTGTTGCTACATCCCAATCTCAAGCCCCAGACTACCAACTTCCGGGAGCCTGTGACCTTGGACTTCCTGG
ACGCAGAGCTGGAAGATGAGAACAAGGAGGAGATCCGTCGCAGCATGATTGACGGCGACAAAGGCCACAA
GCAGATCAGAACCTTGGTCAAATCCCTGGATGAGAGGTACATAGACGAAGTGATTCGGAACTACACCTGG
GTGCCTATAAGGAGTACCAACTACAGCCTGGGGCTGGTGCTCCCACCCTACAGCACCTACTACCTCCAAG
CCAACCTCAGCGACCAGATCCTGCAGGTCAAGTTGCCAATCAGCAAACTGAAGGATTTTGAGTTCCTGCT
TCCCAGCAGCTTTGAGTCTGAAGGACACGTTTTCATTGCTCCGAGAGAGTATTGCAAGGACTTGAACGCC
TCGGACAACAACACCGAGTTCCTGAAGAACTTCATCGAGCTCATGGAGAAAGTGACTCCGGACTCCAAGC
AGTGTAATAACTTCCTTCTTCATAACTTGATTCTGGACACGGGCATTACACAGCAGTTAGTGGAACGTGT
GTGGCGGGACCAAGATCTCAACACGTACAGCCTGCTAGCCGTATTTGCTGCCACTGATGGTGGCATCACA
CGTGTCTTCCCGAACAAGGCAGCCGAAGACTGGACAGAAAACCCTGAACCCTTCAATGCCAGCTTCTACC
GTCGCAGCCTGGATAACCATGGTTATATCTTCAAGCCCCCACACCAGGACTCCCTGTTAAGACCACTGGA
GCTGGAGAATGACACAGTAGGTGTCCTCGTCAGCACAGCTGTGGAGCTCAGTCTAGGTCGTCGCACACTG
AGGCCAGCAGTGGTGGGTGTCAAACTGGACCTAGAGGCTTGGGCTGAAAAGTTCAAGGTGCTGGCCAGCA
ACCGTACCCATCAGGACCAACCTCAGAAGTGCGGCCCCAGCAGCCACTGTGAGATGGACTGCGAGGTTAA
CAACGAGGATCTACTCTGTGTCCTCATTGATGACGGAGGGTTCCTGGTGCTGTCAAACCAGAACCATCAG
TGGGACCAGGTTGGCAGATTCTTCAGTGAGGTGGATGCCAACCTGATGCTGGCACTGTACAATAACTCCT
TCTACACCCGAAAGGAATCCTATGACTATCAGGCAGCCTGTGCCCCTCAGCCTCCTGGGAACCTGGGTGC
TGCACCCCGGGGTGTCTTTGTGCCCACCATTGCAGATTTCCTTAACTTGGCCTGGTGGACCTCTGCTGCC
GCCTGGTCCTTATTCCAGCAGCTACTCTATGGTCTCATCTATCACAGCTGGTTCCAGGCAGACCCGGCAG
AAGCTGAGGGCAGCCCCGAGACGCGCGAGAGCAGCTGCGTCATGAAACAGACCCAGTACTACTTCGGCTC
GGTGAACGCATCCTATAATGCCATCATTGACTGCGGAAACTGCAGCAGGCTGTTCCATGCGCAGAGACTG
ACCAACACCAATCTCCTGTTCGTGGTGGCCGAGAAGCCGCTGTGCAGCCAGTGCGAGGCGGGCCGGCTGC
TGCAGAAGGAGACACACTGCCCAGCGGACGGCCCGGAGCAGTGTGAGCTGGTGCAGAGACCGAGATACCG
AAGAGGTCCGCACATCTGTTTTGACTACAATGCGACGGAAGATACCTCAGACTGTGGCCGCGGAGCCTCC
TTCCCTCCGTCGCTGGGCGTCTTGGTTTCCTTGCAGCTTTTGCTCCTCCTGGGCCTGCCACCTCGGCCGC
AGCCTCAAGTCCACTCCTTCGCTGCCTCTCGCCACCTCTGA

Translation (1156 aa):
MAVPARTCGASWPGPVRTARPWPGRGPRPCPDPRGPASGPARPLLLLLPPLLLLPLLTAPGASAYSFPQQ
HTMQHWARRLEQEIDGVMRIFGGVQQLREIYKDNRNLFEVQENEPQKLVEKVAGDIESLLDRKVQALKRL
ADAAENFQKAHRWQDNIKEEDIMYYDAKADAELDDPESEDMERGSKTSALRLDFIEDPNFKNKVNYSYTA
VQIPTDIYKGSTVILNELNWTEALENVFIENRRQDPTLLWQVFGSATGVTRYYPATPWRAPKKIDLYDVR
RRPWYIQGASSPKDMVIIVDVSGSVSGLTLKLMKTSVCEMLDTLSDDDYVNVASFNEKAQPVSCFTHLVQ
ANVRNKKVFKEAVQGMVAKGTTGYKAGFEYAFDQLQNSNITRANCNKMIMMFTDGGEDRVQDVFEKYNWP
NRTVRVFTFSVGQHNYDVTPLQWMACTNKGYYFEIPSIGAIRINTQEYLDVLGRPMVLAGKDAKQVQWTN
VYEDALGLGLVVTGTLPVFNLTQDGPGEKKNQLILGVMGIDVALNDIKRLTPNYTLGANGYVFAIDLNGY
VLLHPNLKPQTTNFREPVTLDFLDAELEDENKEEIRRSMIDGDKGHKQIRTLVKSLDERYIDEVIRNYTW
VPIRSTNYSLGLVLPPYSTYYLQANLSDQILQVKLPISKLKDFEFLLPSSFESEGHVFIAPREYCKDLNA
SDNNTEFLKNFIELMEKVTPDSKQCNNFLLHNLILDTGITQQLVERVWRDQDLNTYSLLAVFAATDGGIT
RVFPNKAAEDWTENPEPFNASFYRRSLDNHGYIFKPPHQDSLLRPLELENDTVGVLVSTAVELSLGRRTL
RPAVVGVKLDLEAWAEKFKVLASNRTHQDQPQKCGPSSHCEMDCEVNNEDLLCVLIDDGGFLVLSNQNHQ
WDQVGRFFSEVDANLMLALYNNSFYTRKESYDYQAACAPQPPGNLGAAPRGVFVPTIADFLNLAWWTSAA
AWSLFQQLLYGLIYHSWFQADPAEAEGSPETRESSCVMKQTQYYFGSVNASYNAIIDCGNCSRLFHAQRL
TNTNLLFVVAEKPLCSQCEAGRLLQKETHCPADGPEQCELVQRPRYRRGPHICFDYNATEDTSDCGRGAS
FPPSLGVLVSLQLLLLLGLPPRPQPQVHSFAASRHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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