NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS72430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72430.1 Public Mus musculus X Cstf2 23 108 98 CCDS HistoryNCBI Gene:108062Re-query CCDS DB by CCDS ID:72430.1Re-query CCDS DB by GeneID:108062See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72430.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113287.7 ENSMUSP00000108912.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113287.7Link to Ensembl Protein Viewer:ENSMUSP00000108912.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113287Re-query CCDS DB by Protein ID:ENSMUSP00000108912
Original member Current member NCBI NM_001290398.1 NP_001277327.1 Accepted alive Link to Nucleotide Sequence:NM_001290398.1Link to Protein Sequence:NP_001277327.1Re-query CCDS DB by Nucleotide ID:NM_001290398Re-query CCDS DB by Protein ID:NP_001277327Link to BLAST:NP_001277327.1

Chromosomal Locations for CCDS 72430.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134059365 134059422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134060644 134060722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134060945 134061114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134061694 134061830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134062368 134062487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134062598 134062735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134066261 134066384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134069845 134069907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134073214 134073277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134074126 134074310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134074513 134074805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134080327 134080437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134081191 134081313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGCGGGTTTGCCAGTGAGAGACCCTGCGGTGGATCGTTCCCTGCGCTCCGTCTTCGTGGGAAACATCC
CTTATGAAGCTACTGAAGAACAACTGAAGGACATTTTCTCTGAGGTTGGGCCTGTTGTTAGTTTCAGATT
GGTATACGATAGGGAGACAGGAAAACCAAAGGGCTATGGCTTCTGCGAGTACCAAGACCAAGAGACAGCA
CTTAGTGCCATGCGGAACTTGAATGGGCGTGAATTCAGCGGGAGAGCACTTCGAGTGGATAATGCTGCCA
GTGAAAAGAACAAGGAGGAACTGAAGAGCCTTGGCACTGGTGCACCTGTCATAGAGTCACCTTATGGAGA
AAGCATCAGCCCTGAGGATGCCCCTGAATCCATTAGCAAAGCAGTTGCCAGTCTTCCACCAGAACAGATG
TTTGAGTTGATGAAACAAATGAAGCTCTGTGTCCAGAATAGTCCCCAGGAAGCACGAAACATGTTGCTTC
AGAATCCACAGCTGGCTTATGCTTTGTTGCAAGCACAGGTAGTGATGAGAATTGTGGATCCTGAGATTGC
GCTGAAAATTCTGCATCGCCAGACAAATATCCCAACGCTGATTTCAGGCAACCCTCAGCCAGTTCATGTT
GCTGGGCCTGGCTCAGGACCCAATGTTTCAATGAACCAGCAGAATCCGCAGGCCCCTCAGGCTCAATCTT
TGGGTGGAATGCATGTCAATGGCGCACCTCCTATGATGCAAGCTTCTATGCCAGGTGGAGTTCCAGCCCC
AGTGCAGATGGCAGCTGCTGTAGGAGGACCTGGCCCTGGTTCCTTAGCCCCTGCAGGAGTTATGCAAGCC
CAAGTTGGAATGCAAGGAGCTGGACCAGTGCCCATGGAACGAGGACAAGGTGATGCTCCCAATGACCCGC
GGGGAGGCACTTTAATGACTGTAACTGGAGACGTAGAACCTAGAGCTTACCTGGGACCACCACCACCACC
TCATCAGGGCCCACCCATGCACCATGTTCCTGGTCATGAAGGTCGTGGACCGCCTCCACATGACATGAGA
GGAGGACCCCTAGCTGAGCCGAGACCTTTAATGGCAGAACCAAGAGGACCCATGCTAGATCAGAGGGGCC
CACCTCTGGATGCCAGAGGTGGAAGAGATCCCCGAGGATTAGATGCACGGGGGATGGAGGCCAGAGCCAT
GGAAGCAAGAGGACTAGATGCCAGAGGACTGGAAGCCCGTGCCATGGAGGCCCGTGCCATGGAGGCCCGT
GCCATGGAAGCCCGTGCCATGGAAGCCCGTGCCATGGAGGCTCGTGCCATGGAGGCCAGAGGCATGGACA
CCAGAGGCCCAGTACCTGGACCTAGAGGACCTATGCCTAGTGGAATCCAAGGTCCCAATCCAATGAACAT
GGGGGCAGTTGTTCCCCAGGGATCCAGACAGGTACCAGTCATGCAGGGAGCAGGCATGCAAGGAGCAAGC
ATGCAAGGTGGAAGCCAGCCTGGTGGCTTTAGTCCTGGACAGAGCCAAGTCACACCCCAGGATCATGAGA
AGGCTGCTTTGATTATGCAGGTCCTTCAGCTCACTGCAGACCAGATCGCCATGCTGCCTCCTGAGCAAAG
ACAGAGTATCCTAATCTTAAAGGAACAGATACAGAAATCCACTGGGGCACCTTGA

Translation (554 aa):
MAGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA
LSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGESISPEDAPESISKAVASLPPEQM
FELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLISGNPQPVHV
AGPGSGPNVSMNQQNPQAPQAQSLGGMHVNGAPPMMQASMPGGVPAPVQMAAAVGGPGPGSLAPAGVMQA
QVGMQGAGPVPMERGQGDAPNDPRGGTLMTVTGDVEPRAYLGPPPPPHQGPPMHHVPGHEGRGPPPHDMR
GGPLAEPRPLMAEPRGPMLDQRGPPLDARGGRDPRGLDARGMEARAMEARGLDARGLEARAMEARAMEAR
AMEARAMEARAMEARAMEARGMDTRGPVPGPRGPMPSGIQGPNPMNMGAVVPQGSRQVPVMQGAGMQGAS
MQGGSQPGGFSPGQSQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH