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Report for CCDS72462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72462.1 Public Mus musculus X Reps2 23 108 98 CCDS HistoryNCBI Gene:194590Re-query CCDS DB by CCDS ID:72462.1Re-query CCDS DB by GeneID:194590See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112334.7 ENSMUSP00000107953.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112334.7Link to Ensembl Protein Viewer:ENSMUSP00000107953.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112334Re-query CCDS DB by Protein ID:ENSMUSP00000107953
Original member NCBI NM_001290633.1 NP_001277562.1 Updated not alive Link to Nucleotide Sequence:NM_001290633.1Link to Protein Sequence:NP_001277562.1Re-query CCDS DB by Nucleotide ID:NM_001290633Re-query CCDS DB by Protein ID:NP_001277562
Current member NCBI NM_001290633.2 NP_001277562.1 Accepted alive Link to Nucleotide Sequence:NM_001290633.2Link to Protein Sequence:NP_001277562.1Re-query CCDS DB by Nucleotide ID:NM_001290633Re-query CCDS DB by Protein ID:NP_001277562Link to BLAST:NP_001277562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277562.1 647 Q80XA6 647 100% 0 0

Chromosomal Locations for CCDS 72462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 162417543 162417611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162427653 162427758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162438648 162438793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162441037 162441120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162471795 162471856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162503771 162503907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162507607 162507652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162512679 162512732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162514279 162514351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162518329 162518423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162520121 162520263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162522922 162522985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162526258 162526396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162546755 162546849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162552543 162552666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162554797 162554945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162565228 162565351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162643274 162643507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1944 nt):
ATGGAAGTGGCAGCGGGCGGAGGCTGCGGCGCCGGGCCGCCTTTGCTGCTGAGCGATAGCGAGCAGCAGT
GCTACTCTGAGCTCTTCGCGCGCTGTGCGGGCGCTGCAAGCGGGGGCCCCGGACCTGGTCCCCCCGAGGC
TACCAGGGTCGCCCCCGGCACTGCCACTGCGGCCGCTGGTCCAGTAGCTGATCTGTTTCGAGCGTCGCAG
CTGCCACCAGAGACATTGCACCAGATCACAGAACTGTGTGGTGCAAAGCGGGTTGGTTATTTTGGCCCAA
CACAGTTTTATGTTGCCCTGAAATTGATTGCTGCAGCACAGGCTGGCCTCCCTGTGAGAACAGAGAGTAT
TAAATGTGAACTGCCTCTGCCTCGCTTTGTGATGTCGAAGAATGATGGTGAGATACGGTTTGGGAACCCA
GCTGAGCTGCATGGACCGAAGGTTCAGATTCCATACTTAACCACAGAGAAAAATTCCTTCAAAAGAATGG
ACAATGAGGATAAGCAGGAAACACAGTCTCCCACGATGTCACCCCTCGCCTCCCCTCCTTCTTCCCCGCC
TCATTACCAGAGGGTGTCCTTGAGCCATGGCTACAGCAAACTGCGGAGCGGCACAGAACAGATGCATCCA
GCTCCATATGAAAGGCAGCCCATTGGCCAGCCTGAAGGACCCTCATCAGAGGGTCCAGGAGCCAAACCCT
TTCGTCGGCAGGCATCTCTTATTCGGTCCTTTTCAGTGGAGAGAGAACCGCAGGAGAACAACAGTAATTA
CCCAGATGAGCCCTGGAGGATAACTGAAGAACAGCGGGAGTACTACGTCAATCAGTTTCGGTCCCTCCAG
CCAGACCCGAGTTCCTTCATTTCAGGGTCTGTGGCCAAGAACTTCTTCACCAAATCAAAGCTCTCCATTC
CAGAACTCTCTTATATCTGGGAACTCAGTGATGCTGACTGTGATGGAGCCCTGACCTTGTCCGAGTTTTG
TGCTGCATTCCATCTCATCGTAGCCCGGAAGAACGGCTACCCACTGCCAGAGGGCCTGCCTCCAACTCTG
CAGCCAGAGTACTTGCAAGCAGCTTTCCCTAAATCCAAGTGGGAGTGTGCAATTTTTGATTCTTATTCTG
AGTCAATGCCAGCAAACCAACAGTCCTGTGACTTGAATCGGATGGAGAAGACATCTGTTAAAGACGTGGC
TGACTTCCCTGTCCCTACCCAAGATGTGACTACTGCTGATGACAAACAAGCTTTGAAAAGTACTGTTAAC
GAATCCTTACCAAAGGACGTATCTGAGGATACAGCAACTTCTAAGGACTACAACAGTCTCAAAGCAAGAC
CAAGATCCAGATCTTACTCTAGCACCTCCATAGAAGAGGCCATGAAAAGGGGTGAGGACCCTCCCACCCC
ACCACCACGGCCACAGAAAACCCATTCCAGAGCCTCCTCCTTGGATCTGAATAAAGTCTTCCTGCCCAGT
GCGCCAGCTGCTAACTCAGGATTGTTACCCCCACCACCGGCACTTCCTCCGAGACCGTGTCCAACACAGT
CTGAACCAGTGTCTGAAGCTGATTTACACTCTCAGCTGAACAGAGCTCCTTCCCAAGCTGCAGAAAGCAG
TCCAACAAAGATGGATGCACCACATGCTCAGCCTCCATCAAAGCCTATTCGCAGGAAATTCCGACCTGAA
AATCAAACAACAGAAAGCCAAGAGCCTGCTGCTGCAGTTGGAGGGGCAGTTTCTGCAGCAATGGTGAAGC
CCCATCCAACAGTACAAAAGCAGTCTTCCAAGCAGAAGAAGGCTATTCAGACTGCCATTCGCAAAAATAA
GGAGGCCAATGCAGTGCTGGCCCGATTGAACAGTGAGCTGCAGCAGCAGCTGAAGGAAGTTCATCAAGAA
CGGATCGCATTGGAAAACCAATTGGAACAACTTCGCCCAGTCACAGTGTTGTGA

Translation (647 aa):
MEVAAGGGCGAGPPLLLSDSEQQCYSELFARCAGAASGGPGPGPPEATRVAPGTATAAAGPVADLFRASQ
LPPETLHQITELCGAKRVGYFGPTQFYVALKLIAAAQAGLPVRTESIKCELPLPRFVMSKNDGEIRFGNP
AELHGPKVQIPYLTTEKNSFKRMDNEDKQETQSPTMSPLASPPSSPPHYQRVSLSHGYSKLRSGTEQMHP
APYERQPIGQPEGPSSEGPGAKPFRRQASLIRSFSVEREPQENNSNYPDEPWRITEEQREYYVNQFRSLQ
PDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLSEFCAAFHLIVARKNGYPLPEGLPPTL
QPEYLQAAFPKSKWECAIFDSYSESMPANQQSCDLNRMEKTSVKDVADFPVPTQDVTTADDKQALKSTVN
ESLPKDVSEDTATSKDYNSLKARPRSRSYSSTSIEEAMKRGEDPPTPPPRPQKTHSRASSLDLNKVFLPS
APAANSGLLPPPPALPPRPCPTQSEPVSEADLHSQLNRAPSQAAESSPTKMDAPHAQPPSKPIRRKFRPE
NQTTESQEPAAAVGGAVSAAMVKPHPTVQKQSSKQKKAIQTAIRKNKEANAVLARLNSELQQQLKEVHQE
RIALENQLEQLRPVTVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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