NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
725.1 Public Homo sapiens 1 LRRC8C 24 110 108 CCDS HistoryNCBI Gene:84230Re-query CCDS DB by CCDS ID:725.1Re-query CCDS DB by GeneID:84230See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 725.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370454.9 ENSP00000359483.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370454.9Link to Ensembl Protein Viewer:ENSP00000359483.4Re-query CCDS DB by Nucleotide ID:ENST00000370454Re-query CCDS DB by Protein ID:ENSP00000359483
Original member Current member NCBI NM_032270.5 NP_115646.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032270.5Link to Protein Sequence:NP_115646.3Re-query CCDS DB by Nucleotide ID:NM_032270Re-query CCDS DB by Protein ID:NP_115646Link to BLAST:NP_115646.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115646.3 803 Q8TDW0 803 100% 0 0

Chromosomal Locations for CCDS 725.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 89686474 89686611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89712709 89714982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGATTCCCGTGACAGAATTCCGGCAGTTCTCTGAGCAGCAGCCTGCCTTCCGAGTGCTGAAGCCATGGT
GG
GATGTGTTTACCGATTACCTCTCAGTAGCCATGCTCATGATCGGCGTGTTTGGATGTACTTTACAGGT
C
ATGCAAGACAAGATAATCTGCCTTCCGAAAAGAGTGCAGCCTGCTCAGAACCACTCTTCCCTTTCGAAT
GTC
TCTCAAGCAGTTGCCAGTACCACTCCACTGCCTCCACCTAAACCATCTCCTGCTAACCCCATCACTG
TG
GAAATGAAAGGCCTGAAGACAGATTTGGACCTTCAGCAGTACAGCTTTATAAATCAGATGTGTTATGA
G
CGAGCCCTCCACTGGTATGCCAAGTATTTCCCTTACCTTGTCCTCATCCATACCCTGGTCTTTATGCTC
TGC
AGTAACTTTTGGTTCAAATTCCCTGGTTCCAGCTCCAAAATAGAACATTTCATCTCCATTCTGGGGA
AG
TGTTTTGACTCTCCTTGGACCACACGGGCTTTATCTGAAGTGTCTGGGGAGGACTCAGAAGAAAAGGA
C
AACAGGAAGAACAACATGAACAGGTCCAACACCATCCAATCTGGTCCAGAAGACAGCCTGGTCAACTCT
CAG
TCTTTAAAGTCCATTCCTGAGAAGTTTGTAGTTGATAAATCCACTGCAGGGGCTCTGGATAAAAAGG
AA
GGTGAGCAGGCTAAGGCCTTATTTGAGAAGGTGAAGAAGTTCAGGCTGCATGTGGAAGAAGGTGATAT
T
CTATATGCCATGTATGTTCGCCAGACTGTACTTAAAGTTATCAAATTCCTAATCATCATTGCATATAAT
AGT
GCTCTGGTTTCCAAGGTCCAGTTTACAGTGGACTGTAATGTGGACATTCAGGACATGACTGGATATA
AA
AACTTTTCTTGCAATCATACCATGGCACACTTGTTCTCAAAACTGTCCTTTTGCTATCTGTGCTTTGT
T
AGTATCTATGGATTGACGTGCCTTTATACCTTATACTGGCTGTTCTACCGTTCTCTACGGGAATATTCC
TTT
GAGTATGTCCGTCAGGAGACTGGAATTGATGATATTCCAGATGTGAAAAATGACTTTGCTTTTATGC
TT
CATATGATAGATCAGTATGACCCTCTCTATTCCAAGAGATTTGCAGTGTTCCTGTCTGAAGTCAGTGA
A
AACAAATTAAAGCAGCTGAACTTAAATAACGAATGGACTCCTGATAAACTGAGGCAGAAGCTACAGACA
AAT
GCCCATAATCGACTGGAATTGCCTCTTATCATGCTCTCTGGCCTTCCAGACACTGTTTTTGAAATCA
CA
GAGTTGCAATCTCTAAAACTTGAAATCATTAAGAACGTAATGATACCAGCCACCATTGCACAGCTAGA
C
AATCTTCAAGAGCTCTCTCTGCACCAGTGTTCTGTCAAAATCCACAGTGCGGCGCTCTCTTTCCTGAAG
GAA
AACCTCAAGGTCTTGAGCGTCAAGTTTGATGACATGAGGGAACTCCCCCCCTGGATGTATGGGCTCC
GA
AATCTGGAAGAGCTGTACCTAGTTGGCTCTCTAAGTCATGATATTTCCAGAAATGTCACCCTTGAGTC
T
CTGCGGGATCTCAAAAGCCTTAAAATTCTCTCTATCAAAAGCAACGTTTCCAAAATCCCTCAGGCAGTG
GTT
GATGTTTCCAGCCATCTCCAGAAGATGTGCATACATAATGATGGCACCAAGCTGGTGATGCTCAACA
AC
TTAAAGAAGATGACCAATCTGACAGAGCTGGAGCTGGTCCACTGTGACCTGGAGCGTATTCCTCATGC
T
GTGTTCAGCCTACTCAGCCTCCAGGAATTGGACCTGAAGGAAAACAATCTGAAATCTATAGAAGAAATC
GTT
AGCTTTCAGCACTTAAGAAAGTTGACAGTGCTAAAACTGTGGCATAACAGCATCACCTACATCCCAG
AG
CATATAAAGAAACTCACCAGCCTGGAACGCCTGTCCTTTAGTCACAATAAAATAGAGGTGCTGCCTTC
C
CACCTCTTCCTATGCAACAAGATCCGATACTTGGACTTATCGTACAATGACATTCGATTTATCCCCCCT
GAA
ATTGGAGTTCTACAAAGTTTACAGTATTTTTCCATCACATGTAACAAAGTGGAAAGCCTTCCAGATG
AA
CTCTACTTCTGCAAGAAACTTAAAACTCTGAAGATTGGAAAAAACAGCCTATCTGTACTTTCACCGAA
A
ATTGGAAATTTGCTATTTCTTTCCTACTTAGATGTAAAAGGTAATCACTTTGAAATCCTCCCTCCTGAA
CTG
GGTGACTGTCGGGCTCTGAAGCGAGCTGGTTTAGTTGTAGAAGATGCTCTGTTTGAAACTCTGCCTT
CT
GACGTCCGGGAGCAAATGAAAACAGAATAA


Translation (803 aa):
MIPVTEFRQFSEQQPAFRVLKPWWDVFTDYLSVAMLMIGVFGCTLQVMQDKIICLPKRVQPAQNHSSLSN
V
SQAVASTTPLPPPKPSPANPITVEMKGLKTDLDLQQYSFINQMCYERALHWYAKYFPYLVLIHTLVFML
C
SNFWFKFPGSSSKIEHFISILGKCFDSPWTTRALSEVSGEDSEEKDNRKNNMNRSNTIQSGPEDSLVNS
Q
SLKSIPEKFVVDKSTAGALDKKEGEQAKALFEKVKKFRLHVEEGDILYAMYVRQTVLKVIKFLIIIAYN
S
ALVSKVQFTVDCNVDIQDMTGYKNFSCNHTMAHLFSKLSFCYLCFVSIYGLTCLYTLYWLFYRSLREYS
F
EYVRQETGIDDIPDVKNDFAFMLHMIDQYDPLYSKRFAVFLSEVSENKLKQLNLNNEWTPDKLRQKLQT
N
AHNRLELPLIMLSGLPDTVFEITELQSLKLEIIKNVMIPATIAQLDNLQELSLHQCSVKIHSAALSFLK
E
NLKVLSVKFDDMRELPPWMYGLRNLEELYLVGSLSHDISRNVTLESLRDLKSLKILSIKSNVSKIPQAV
V
DVSSHLQKMCIHNDGTKLVMLNNLKKMTNLTELELVHCDLERIPHAVFSLLSLQELDLKENNLKSIEEI
V
SFQHLRKLTVLKLWHNSITYIPEHIKKLTSLERLSFSHNKIEVLPSHLFLCNKIRYLDLSYNDIRFIPP
E
IGVLQSLQYFSITCNKVESLPDELYFCKKLKTLKIGKNSLSVLSPKIGNLLFLSYLDVKGNHFEILPPE
L
GDCRALKRAGLVVEDALFETLPSDVREQMKTE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser