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Report for CCDS72880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72880.1 Public Homo sapiens 1 NOTCH2NLA 24 110 108 CCDS HistoryNCBI Gene:388677Re-query CCDS DB by CCDS ID:72880.1Re-query CCDS DB by GeneID:388677See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72880.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000362074.8 ENSP00000354929.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000362074.8Link to Ensembl Protein Viewer:ENSP00000354929.6Re-query CCDS DB by Nucleotide ID:ENST00000362074Re-query CCDS DB by Protein ID:ENSP00000354929
Original member Current member EBI ENST00000687833.1 ENSP00000508809.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687833.1Link to Ensembl Protein Viewer:ENSP00000508809.1Re-query CCDS DB by Nucleotide ID:ENST00000687833Re-query CCDS DB by Protein ID:ENSP00000508809
Original member Current member EBI ENST00000692119.1 ENSP00000510366.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692119.1Link to Ensembl Protein Viewer:ENSP00000510366.1Re-query CCDS DB by Nucleotide ID:ENST00000692119Re-query CCDS DB by Protein ID:ENSP00000510366
Original member Current member EBI ENST00000686973.1 ENSP00000510377.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686973.1Link to Ensembl Protein Viewer:ENSP00000510377.1Re-query CCDS DB by Nucleotide ID:ENST00000686973Re-query CCDS DB by Protein ID:ENSP00000510377
Original member Current member NCBI NM_203458.6 NP_982283.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_203458.6Link to Protein Sequence:NP_982283.2Re-query CCDS DB by Nucleotide ID:NM_203458Re-query CCDS DB by Protein ID:NP_982283Link to BLAST:NP_982283.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_982283.2 236 Q7Z3S9-1 236 100% 0 0

Chromosomal Locations for CCDS 72880.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 146156153 146156229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 146156480 146156815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 146164751 146165010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 146189300 146189337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGTGTGTTACCTACCACAATGGCACAGGATACTGCAAATGTCCAGAAGGCTTCTTGGGGGAATATTGTC
AACATCGAGACCCCTGTGAGAAGAACCGCTGCCAGAATGGTGGGACTTGTGTGGCCCAGGCCATGCTGGG
GAAAGCCACGTGCCGATGTGCCTCAGGGTTTACAGGAGAGGACTGCCAGTACTCGACATCTCATCCATGC
TTTGTGTCTCGACCTTGCCTGAATGGCGGCACATGCCATATGCTCAGCCGGGATACCTATGAGTGCACCT
GTCAAGTCGGGTTTACAGGTAAGGAGTGCCAATGGACCGATGCCTGCCTGTCTCATCCCTGTGCAAATGG
AAGTACCTGTACCACTGTGGCCAACCAGTTCTCCTGCAAATGCCTCACAGGCTTCACAGGGCAGAAGTGT
GAGACTGATGTCAATGAGTGTGACATTCCAGGACACTGCCAGCATGGTGGCACCTGCCTCAACCTGCCTG
GTTCCTACCAGTGCCAGTGCCTTCAGGGCTTCACAGGCCAGTACTGTGACAGCCTGTATGTGCCCTGTGC
ACCCTCGCCTTGTGTCAATGGAGGCACCTGTCGGCAGACTGGTGACTTCACTTTTGAGTGCAACTGCCTT
CCAGAAACAGTGAGAAGAGGAACAGAGCTCTGGGAAAGAGACAGGGAAGTCTGGAATGGAAAAGAACACG
ATGAGAATTAG

Translation (236 aa):
MCVTYHNGTGYCKCPEGFLGEYCQHRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPC
FVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQWTDACLSHPCANGSTCTTVANQFSCKCLTGFTGQKC
ETDVNECDIPGHCQHGGTCLNLPGSYQCQCLQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCL
PETVRRGTELWERDREVWNGKEHDEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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