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Report for CCDS7308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7308.1 Public Homo sapiens 10 TBATA 24 110 108 CCDS HistoryNCBI Gene:219793Re-query CCDS DB by CCDS ID:7308.1Re-query CCDS DB by GeneID:219793See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299290.5 ENSP00000299290.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000299290.5Link to Ensembl Protein Viewer:ENSP00000299290.1Re-query CCDS DB by Nucleotide ID:ENST00000299290Re-query CCDS DB by Protein ID:ENSP00000299290
Original member Current member EBI ENST00000692183.1 ENSP00000509602.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692183.1Link to Ensembl Protein Viewer:ENSP00000509602.1Re-query CCDS DB by Nucleotide ID:ENST00000692183Re-query CCDS DB by Protein ID:ENSP00000509602
Original member Current member NCBI NM_001318242.2 NP_001305171.1 Accepted alive Link to Nucleotide Sequence:NM_001318242.2Link to Protein Sequence:NP_001305171.1Re-query CCDS DB by Nucleotide ID:NM_001318242Re-query CCDS DB by Protein ID:NP_001305171Link to BLAST:NP_001305171.1
Original member Current member NCBI NM_152710.4 NP_689923.3 Accepted alive Link to Nucleotide Sequence:NM_152710.4Link to Protein Sequence:NP_689923.3Re-query CCDS DB by Nucleotide ID:NM_152710Re-query CCDS DB by Protein ID:NP_689923Link to BLAST:NP_689923.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305171.1 351 Q96M53-1 351 100% 0 0
NP_689923.3 351 Q96M53-1 351 100% 0 0

Chromosomal Locations for CCDS 7308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70771376 70771461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70772514 70772566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70774213 70774357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70775189 70775270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70777153 70777335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70778557 70778636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70779593 70779742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70781801 70782036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70783339 70783379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGCTACAGATGTTCAATTGGCTGATTATCCACTGATGAGTCCAAAGGCTGAGCTGAAACTGGAGAAGA
AGTCAGGGCGCAAGCCAAGGAGCCCCAGGGACAGTGGGCCACAGAAAGAACTGGTGATCCCAGGGATTGT
GGATTTCGAGCGGATCCGCCGGGCATTGAGGACCCCAAAGCCCCAAACCCCTGGCACCTACTGCTTTGGA
CGCCTCAGTCACCACTCCTTCTTCTCCCGGCACCACCCACACCCCCAGCACGTGACCCACATCCAAGATC
TCACCGGGAAGCCTGTCTGTGTCGTCAGGGATTTTCCAGCCCCCTTGCCTGAGTCAACTGTCTTTTCCGG
CTGTCAAATGGGGATACCCACCATCTCTGTCCCCATTGGAGACCCACAGTCTAATCGGAACCCCCAGCTT
TCTTCTGAAGCCTGGAAGAAGGAGTTGAAGGAGCTAGCTTCCCGGGTGGCCTTCCTCACCAAGGAGGATG
AACTGAAGAAGAAAGAGAAGGAGCAGAAGGAGGAGCCTCTGCGGGAGCAGGGGGCAAAGTACTCAGCAGA
GACTGGGAGGCTCATCCCCGCTTCCACCCGGGCTGTCGGCCGCCGCAGATCTCACCAGGGCCAGCAGAGT
CAGTCTTCCAGCAGACATGAAGGAGTCCAGGCTTTCCTCCTTCAGGATCAGGAGCTGCTGGTCCTGGAGC
TCCTGTGTCGGATCCTGGAAACAGACTTGCTAAGCGCAATCCAGTTCTGGCTGCTCTACGCTCCGCCCAA
GGAAAAAGACCTCGCTCTGGGACTCCTGCAGACAGCAGTGGCTCAGCTCCTTCCCCAGCCCCTAGTCTCC
ATCCCTACAGAAAAGCTCCTAAGCCAGCTTCCAGAAGTGCATGAACCTCCTCAAGAGAAGCAAGAGCCAC
CCTGCAGTCAATCCCCGAAGAAAACGAAGATATCACCTTTTACAAAAAGCGAAAAACCAGAGTACATTGG
AGAAGCTCAAGTCCTCCAGATGCATTCAAGCCAGAACACAGAGAAGAAGACATCGAAGCCGAGGGCAGAG
AGCTGA

Translation (351 aa):
MATDVQLADYPLMSPKAELKLEKKSGRKPRSPRDSGPQKELVIPGIVDFERIRRALRTPKPQTPGTYCFG
RLSHHSFFSRHHPHPQHVTHIQDLTGKPVCVVRDFPAPLPESTVFSGCQMGIPTISVPIGDPQSNRNPQL
SSEAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQGAKYSAETGRLIPASTRAVGRRRSHQGQQS
QSSSRHEGVQAFLLQDQELLVLELLCRILETDLLSAIQFWLLYAPPKEKDLALGLLQTAVAQLLPQPLVS
IPTEKLLSQLPEVHEPPQEKQEPPCSQSPKKTKISPFTKSEKPEYIGEAQVLQMHSSQNTEKKTSKPRAE
S


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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