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Report for CCDS74840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74840.1 Public Homo sapiens 22 GAS2L1 24 110 108 CCDS HistoryNCBI Gene:10634Re-query CCDS DB by CCDS ID:74840.1Re-query CCDS DB by GeneID:10634See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74840.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621062.4 ENSP00000478343.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621062.4Link to Ensembl Protein Viewer:ENSP00000478343.1Re-query CCDS DB by Nucleotide ID:ENST00000621062Re-query CCDS DB by Protein ID:ENSP00000478343
Original member Current member EBI ENST00000616432.5 ENSP00000478908.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000616432.5Link to Ensembl Protein Viewer:ENSP00000478908.1Re-query CCDS DB by Nucleotide ID:ENST00000616432Re-query CCDS DB by Protein ID:ENSP00000478908
Original member Current member EBI ENST00000611648.2 ENSP00000479551.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611648.2Link to Ensembl Protein Viewer:ENSP00000479551.1Re-query CCDS DB by Nucleotide ID:ENST00000611648Re-query CCDS DB by Protein ID:ENSP00000479551
Original member Current member EBI ENST00000618518.3 ENSP00000481012.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618518.3Link to Ensembl Protein Viewer:ENSP00000481012.1Re-query CCDS DB by Nucleotide ID:ENST00000618518Re-query CCDS DB by Protein ID:ENSP00000481012
Original member Current member NCBI NM_001362985.3 NP_001349914.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001362985.3Link to Protein Sequence:NP_001349914.1Re-query CCDS DB by Nucleotide ID:NM_001362985Re-query CCDS DB by Protein ID:NP_001349914Link to BLAST:NP_001349914.1
Original member Current member NCBI NM_001395196.1 NP_001382125.1 Accepted alive Link to Nucleotide Sequence:NM_001395196.1Link to Protein Sequence:NP_001382125.1Re-query CCDS DB by Nucleotide ID:NM_001395196Re-query CCDS DB by Protein ID:NP_001382125Link to BLAST:NP_001382125.1
Original member Current member NCBI NM_001395197.1 NP_001382126.1 Accepted alive Link to Nucleotide Sequence:NM_001395197.1Link to Protein Sequence:NP_001382126.1Re-query CCDS DB by Nucleotide ID:NM_001395197Re-query CCDS DB by Protein ID:NP_001382126Link to BLAST:NP_001382126.1
Original member Current member NCBI NM_006478.5 NP_006469.2 Accepted alive Link to Nucleotide Sequence:NM_006478.5Link to Protein Sequence:NP_006469.2Re-query CCDS DB by Nucleotide ID:NM_006478Re-query CCDS DB by Protein ID:NP_006469Link to BLAST:NP_006469.2
Original member Current member NCBI NM_152236.3 NP_689422.1 Accepted alive Link to Nucleotide Sequence:NM_152236.3Link to Protein Sequence:NP_689422.1Re-query CCDS DB by Nucleotide ID:NM_152236Re-query CCDS DB by Protein ID:NP_689422Link to BLAST:NP_689422.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349914.1 681 Q99501-1 681 99.8532% 0 1
NP_001382125.1 681 Q99501-1 681 99.8532% 0 1
NP_001382126.1 681 Q99501-1 681 99.8532% 0 1
NP_006469.2 681 Q99501-1 681 99.8532% 0 1
NP_689422.1 681 Q99501-1 681 99.8532% 0 1

Chromosomal Locations for CCDS 74840.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 29308106 29308738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29310439 29310546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29310638 29310734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29310827 29310998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29311462 29312497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGGCAGACCCAGTGGCGGGCATCGCGGGCTCGGCGGCCAAGAGCGTGCGGCCATTTCGCTCCAGTGAGG
CCTACGTGGAGGCCATGAAGGAGGACCTGGCCGAGTGGCTCAATGCCTTGTACGGCCTGGGTCTCCCGGG
TGGTGGCGATGGCTTCCTGACAGGGCTGGCCACGGGCACGACCCTGTGCCAACATGCCAACGCCGTGACC
GAGGCTGCCCGTGCATTGGCAGCCGCCCGCCCGGCCCGAGGTGTGGCCTTCCAGGCGCACAGTGTAGTGC
CTGGCTCCTTCATGGCGCGCGACAACGTGGCCACCTTCATCGGCTGGTGCCGCGTGGAGCTGGGTGTGCC
GGAGGTGCTCATGTTTGAGACTGAGGACCTGGTGCTGCGCAAGAACGAGAAGAGCGTGGTGCTGTGCCTG
CTGGAGGTGGCGCGGCGTGGGGCACGCCTGGGCCTGCTGGCCCCACGCCTCGTGCAGTTTGAGCAGGAGA
TTGAGCGGGAGCTGCGTGCTGCACCCCCAGCCCCCAACGCCCCTGCCGCTGGGGAGGACACCACTGAAAC
CGCCCCCGCACCAGGGACTCCTGCCCGCGGCCCCCGCATGACACCCAGCGACCTGCGCAACCTCGACGAG
CTGGTGAGGGAGATTCTGGGCCGCTGCACCTGCCCTGACCAGTTTCCCATGATCAAGGTCTCAGAGGGGA
AGTACCGTGTGGGGGACTCGAGCCTGCTCATCTTTGTGCGGGTGCTGAGGAGCCACGTGATGGTGCGAGT
GGGTGGTGGCTGGGACACGCTGGAGCATTACCTGGACAAGCACGACCCGTGCCGCTGCTCCTCCACTGCT
CATCGCCCACCCCAGCCGAGGGTCTGCACCTTTTCTCCACAGAGGGTGTCGCCCACCACCAGTCCCCGCC
CTGCTAGCCCAGTCCCTGGGAGTGAGCGCCGGGGCTCCCGGCCTGAGATGACTCCCGTTAGCTTACGAAG
CACAAAGGAGGGGCCCGAGACCCCACCCAGGCCCCGGGATCAGCTGCCCCCCCATCCCCGCTCCCGCCGC
TACTCCGGGGACAGTGACTCCTCAGCCTCCTCCGCCCAGAGCGGCCCCCTTGGTACCCGCAGTGATGACA
CAGGCACTGGCCCCCGGAGGGAGCGACCCAGCCGGCGGCTGACCACAGGCACCCCGGCCTCTCCGAGACG
GCCTCCTGCCCTGCGCAGCCAGTCCCGAGACCGGCTGGATCGCGGCCGGCCCCGGGGGGCCCCAGGAGGC
AGGGGAGCCCAGCTGTCGGTCCCCAGCCCTGCCCGGCGGGCCCGGAGCCAGAGCCGCGAGGAGCAGGCTG
TGCTGCTTGTGCGCAGGGATCGAGACGGGCAGCACTCATGGGTGCCAAGGGGCAGGGGCAGTGGGGGCTC
GGGCAGGAGCACCCCCCAGACTCCCCGTGCCCGCAGCCCTGCAGCACCCCGGCTTTCCCGGGTCTCCAGC
CCCAGTCCAGAGTTGGGCACCACACCGGCCAGCATCTTCCGCACACCCCTGCAGCTCGACCCGCAGCAGG
AGCAGCAGCTGTTCCGGCGCCTGGAAGAGGAGTTCCTGGCCAATGCCCGGGCCCTTGAGGCTGTTGCTAG
CGTGACCCCCACTGGACCAGCCCCTGACCCAGCTCGGGCCCCCGACCCTCCAGCTCCTGACTCTGCCTAT
TGTTCCTCCAGTTCCTCCTCTTCGTCCCTCAGCGTCCTGGGTGGCAAATGTGGCCAACCTGGGGACTCTG
GCCGGACGGCCAATGGGCTGCCTGGGCCCCGAAGCCAAGCCCTTTCCAGCTCCTCCGATGAAGGCAGCCC
CTGCCCTGGCATGGGGGGGCCACTAGATGCACCTGGGAGCCCCCTGGCTTGCACTGAACCCTCGAGGACC
TGGGCACGGGGTCGGATGGACACACAGCCAGACCGTAAACCCTCACGTATCCCCACGCCTCGGGGCCCCC
GCCGCCCCTCCGGACCCGCAGAGCTGGGGACATGGCATGCCCTGCACTCAGTCACCCCGAGGGCTGAGCC
AGATTCCTGGATGTGA

Translation (681 aa):
MADPVAGIAGSAAKSVRPFRSSEAYVEAMKEDLAEWLNALYGLGLPGGGDGFLTGLATGTTLCQHANAVT
EAARALAAARPARGVAFQAHSVVPGSFMARDNVATFIGWCRVELGVPEVLMFETEDLVLRKNEKSVVLCL
LEVARRGARLGLLAPRLVQFEQEIERELRAAPPAPNAPAAGEDTTETAPAPGTPARGPRMTPSDLRNLDE
LVREILGRCTCPDQFPMIKVSEGKYRVGDSSLLIFVRVLRSHVMVRVGGGWDTLEHYLDKHDPCRCSSTA
HRPPQPRVCTFSPQRVSPTTSPRPASPVPGSERRGSRPEMTPVSLRSTKEGPETPPRPRDQLPPHPRSRR
YSGDSDSSASSAQSGPLGTRSDDTGTGPRRERPSRRLTTGTPASPRRPPALRSQSRDRLDRGRPRGAPGG
RGAQLSVPSPARRARSQSREEQAVLLVRRDRDGQHSWVPRGRGSGGSGRSTPQTPRARSPAAPRLSRVSS
PSPELGTTPASIFRTPLQLDPQQEQQLFRRLEEEFLANARALEAVASVTPTGPAPDPARAPDPPAPDSAY
CSSSSSSSSLSVLGGKCGQPGDSGRTANGLPGPRSQALSSSSDEGSPCPGMGGPLDAPGSPLACTEPSRT
WARGRMDTQPDRKPSRIPTPRGPRRPSGPAELGTWHALHSVTPRAEPDSWM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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