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Report for CCDS74911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74911.1 Public Homo sapiens 3 PLCL2 24 110 108 CCDS HistoryNCBI Gene:23228Re-query CCDS DB by CCDS ID:74911.1Re-query CCDS DB by GeneID:23228See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74911.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000615277.5 ENSP00000478458.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000615277.5Link to Ensembl Protein Viewer:ENSP00000478458.1Re-query CCDS DB by Nucleotide ID:ENST00000615277Re-query CCDS DB by Protein ID:ENSP00000478458
Original member Current member NCBI NM_001144382.2 NP_001137854.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144382.2Link to Protein Sequence:NP_001137854.1Re-query CCDS DB by Nucleotide ID:NM_001144382Re-query CCDS DB by Protein ID:NP_001137854Link to BLAST:NP_001137854.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137854.1 1127 Q9UPR0-1 1127 100% 0 0

Chromosomal Locations for CCDS 74911.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 16885040 16885366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17009674 17012160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17014708 17014911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17042874 17042949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17067956 17068065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17089733 17089912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3384 nt):
ATGGCGGAGTGCGGCCGGGGGGGCGCCGCCGGCGGGGCCCTGCCCACCTCCCCGGGCCCGGCCCTCGGCG
CCAAGGGCGCCCTGAAAGCCGGAGTGGGGGAAGGCGGTGGCGGGGGAGGTCGCCTCGGCCACGGGCGGGC
GCGCTATGACAGCGGCGGGGTTTCCAACGGAGACTGCAGCCTCGGCGTGTCCGGGGACGAAGCCCGGGCT
AGCCCTACCAGGGGACCCCGCGGCGTTGCGCTCGCCCCGACCCCCAGCGCGGTCGTCTGTACCCTCCCCC
GGGAGAGCAAGCCGGGCGGCCTGCCCCGCCGGAGCAGCATCATCAAGGATGGTACAAAACAGAAGAGGGA
ACGGAAAAAGACAGTCTCATTCAGCAGCATGCCAACAGAGAAGAAGATCAGCAGTGCAAGTGATTGTATT
AATTCAATGGTTGAGGGTTCAGAACTCAAAAAGGTTCGCTCCAACTCTAGAATTTATCATAGGTACTTTT
TACTGGATGCTGACATGCAGAGCCTAAGGTGGGAGCCATCTAAGAAGGATTCTGAGAAAGCCAAGATTGA
CATTAAATCCATCAAGGAAGTGAGAACAGGAAAAAACACAGACATATTCCGCAGCAATGGCATTTCTGAC
CAGATATCTGAAGATTGTGCGTTTTCCGTCATATATGGAGAGAATTATGAGTCACTGGATTTGGTTGCCA
ACTCCGCAGATGTTGCAAACATCTGGGTTACAGGACTGCGGTACCTAATTTCTTATGGAAAACATACACT
TGATATGTTAGAAAGTAGCCAAGATAACATGAGGACTTCTTGGGTTTCACAAATGTTTAGTGAAATTGAT
GTAGATAACCTTGGACATATAACTCTGTGTAATGCTGTGCAATGTATCAGAAACCTCAATCCTGGTTTAA
AAACGAGCAAAATTGAGCTTAAGTTCAAAGAATTGCATAAATCAAAGGACAAAGCTGGTACCGAGGTCAC
AAAGGAAGAATTTATTGAGGTTTTTCATGAGCTTTGTACTAGACCTGAAATTTATTTCCTTTTAGTTCAG
TTTTCAAGCAATAAAGAATTCCTTGATACCAAGGACCTTATGATGTTTCTTGAGGCAGAACAGGGTGTGG
CACATATAAATGAGGAAATAAGCCTTGAAATTATTCACAAATATGAACCATCCAAAGAGGGTCAGGAAAA
GGGCTGGCTCTCCATAGACGGGTTCACTAATTACCTTATGTCACCTGACTGTTATATATTCGATCCAGAA
CATAAGAAGGTCTGTCAGGATATGAAGCAACCTCTGTCTCATTACTTTATAAACTCATCTCATAATACAT
ACTTAATAGAGGATCAGTTCCGAGGTCCCTCCGACATCACAGGATATATTCGAGCTCTTAAAATGGGTTG
CCGGAGTGTTGAATTAGATGTATGGGATGGGCCGGACAATGAACCTGTAATTTACACAGGCCACACCATG
ACCTCTCAGATAGTTTTCCGCAGTGTCATTGATATTATTAACAAGTATGCATTCTTTGCTTCAGAGTATC
CTCTTATCTTGTGTTTAGAAAACCACTGTTCCATTAAACAACAGAAGGTAATGGTTCAGCACATGAAGAA
ACTTTTAGGAGACAAGCTCTATACAACATCACCCAATGTTGAGGAATCTTATCTACCATCCCCAGATGTC
CTGAAAGGGAAAATACTAATTAAAGCAAAGAAGCTGTCCTCAAATTGCTCTGGGGTAGAAGGAGATGTTA
CTGACGAAGATGAAGGAGCAGAAATGTCTCAGAGGATGGGAAAAGAGAACATGGAGCAACCCAATAATGT
GCCTGTGAAGCGATTTCAGCTTTGTAAAGAACTGTCTGAACTGGTCAGCATCTGCAAATCAGTTCAGTTC
AAAGAATTTCAGGTGTCGTTTCAGGTTCAGAAGTACTGGGAAGTCTGTTCCTTTAATGAAGTGCTTGCCA
GCAAGTACGCCAATGAAAATCCAGGGGACTTTGTAAATTACAACAAACGTTTTCTTGCTAGGGTTTTTCC
CAGTCCAATGAGAATTGATTCCAGTAACATGAATCCTCAAGATTTTTGGAAATGTGGTTGCCAAATTGTA
GCCATGAACTTTCAGACACCAGGACTGATGATGGACCTGAATATTGGCTGGTTTAGGCAGAACGGAAACT
GTGGCTATGTCCTCCGGCCAGCCATCATGAGGGAGGAGGTCTCCTTCTTCAGCGCCAATACAAAAGACTC
TGTCCCAGGGGTCTCACCTCAACTTCTTCACATTAAAATCATCAGTGGGCAGAACTTTCCCAAGCCCAAA
GGATCAGGTGCCAAAGGTGATGTGGTAGATCCTTATGTCTATGTTGAAATCCATGGAATCCCTGCTGATT
GTGCAGAACAAAGGACAAAAACAGTGCACCAGAATGGAGACGCTCCCATTTTTGATGAAAGCTTTGAATT
TCAAATCAACCTGCCTGAACTGGCCATGGTGCGCTTTGTAGTGCTGGATGATGACTACATTGGGGATGAA
TTCATCGGCCAGTACACAATTCCCTTTGAATGTTTACAGACGGGCTACCGCCATGTCCCCCTGCAGTCCT
TAACTGGAGAGGTCCTTGCACATGCTTCTTTATTTGTCCACGTGGCTATTACTAACCGAAGAGGAGGAGG
AAAGCCTCATAAAAGGGGCCTTTCTGTGAGAAAAGGGAAGAAATCCAGGGAATATGCATCTTTGAGAACA
CTGTGGATTAAAACCGTGGATGAGGTATTCAAGAATGCCCAGCCCCCTATACGGGATGCCACAGATCTGA
GAGAAAACATGCAGAATGCGGTGGTGTCATTCAAGGAGCTGTGTGGCCTCTCCTCTGTGGCCAATCTCAT
GCAGTGCATGTTGGCGGTGTCTCCCCGCTTTCTGGGGCCCGATAACACACCCCTAGTGGTCCTAAATCTC
AGCGAGCAGTACCCCACAATGGAGCTGCAGGGAATTGTGCCGGAGGTTCTGAAGAAGATCGTAACAACTT
ATGACATGATGATTCAGTCCCTCAAGGCGTTGATTGAAAATGCAGATGCTGTATATGAAAAGATCGTACA
TTGTCAGAAGGCAGCCATGGAATTCCATGAACACTTGCACAGCATAGGCACCAAGGAAGGTTTGAAGGAA
AGAAAACTACAAAAAGCAGTGGAGAGCTTTACCTGGAATATTACCATCTTAAAGGGACAAGCAGATCTTT
TGAAATATGCTAAGAATGAGACATTGGAGAACCTGAAACAAATCCATTTTGCTGCTGTTTCATGTGGACT
GAATAAACCAGGCACCGAAAATGCTGATGTCCAGAAGCCACGCCGGAGCTTGGAAGTCATACCCGAAAAA
GCAAACGATGAAACTGGAGAATGA

Translation (1127 aa):
MAECGRGGAAGGALPTSPGPALGAKGALKAGVGEGGGGGGRLGHGRARYDSGGVSNGDCSLGVSGDEARA
SPTRGPRGVALAPTPSAVVCTLPRESKPGGLPRRSSIIKDGTKQKRERKKTVSFSSMPTEKKISSASDCI
NSMVEGSELKKVRSNSRIYHRYFLLDADMQSLRWEPSKKDSEKAKIDIKSIKEVRTGKNTDIFRSNGISD
QISEDCAFSVIYGENYESLDLVANSADVANIWVTGLRYLISYGKHTLDMLESSQDNMRTSWVSQMFSEID
VDNLGHITLCNAVQCIRNLNPGLKTSKIELKFKELHKSKDKAGTEVTKEEFIEVFHELCTRPEIYFLLVQ
FSSNKEFLDTKDLMMFLEAEQGVAHINEEISLEIIHKYEPSKEGQEKGWLSIDGFTNYLMSPDCYIFDPE
HKKVCQDMKQPLSHYFINSSHNTYLIEDQFRGPSDITGYIRALKMGCRSVELDVWDGPDNEPVIYTGHTM
TSQIVFRSVIDIINKYAFFASEYPLILCLENHCSIKQQKVMVQHMKKLLGDKLYTTSPNVEESYLPSPDV
LKGKILIKAKKLSSNCSGVEGDVTDEDEGAEMSQRMGKENMEQPNNVPVKRFQLCKELSELVSICKSVQF
KEFQVSFQVQKYWEVCSFNEVLASKYANENPGDFVNYNKRFLARVFPSPMRIDSSNMNPQDFWKCGCQIV
AMNFQTPGLMMDLNIGWFRQNGNCGYVLRPAIMREEVSFFSANTKDSVPGVSPQLLHIKIISGQNFPKPK
GSGAKGDVVDPYVYVEIHGIPADCAEQRTKTVHQNGDAPIFDESFEFQINLPELAMVRFVVLDDDYIGDE
FIGQYTIPFECLQTGYRHVPLQSLTGEVLAHASLFVHVAITNRRGGGKPHKRGLSVRKGKKSREYASLRT
LWIKTVDEVFKNAQPPIRDATDLRENMQNAVVSFKELCGLSSVANLMQCMLAVSPRFLGPDNTPLVVLNL
SEQYPTMELQGIVPEVLKKIVTTYDMMIQSLKALIENADAVYEKIVHCQKAAMEFHEHLHSIGTKEGLKE
RKLQKAVESFTWNITILKGQADLLKYAKNETLENLKQIHFAAVSCGLNKPGTENADVQKPRRSLEVIPEK
ANDETGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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