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Report for CCDS766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
766.1 Public Homo sapiens 1 LRRC39 24 110 108 CCDS HistoryNCBI Gene:127495Re-query CCDS DB by CCDS ID:766.1Re-query CCDS DB by GeneID:127495See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 766.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342895.7 ENSP00000344470.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342895.7Link to Ensembl Protein Viewer:ENSP00000344470.3Re-query CCDS DB by Nucleotide ID:ENST00000342895Re-query CCDS DB by Protein ID:ENSP00000344470
Original member Current member EBI ENST00000370137.6 ENSP00000359156.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370137.6Link to Ensembl Protein Viewer:ENSP00000359156.1Re-query CCDS DB by Nucleotide ID:ENST00000370137Re-query CCDS DB by Protein ID:ENSP00000359156
Original member Current member NCBI NM_001256386.2 NP_001243315.1 Accepted alive Link to Nucleotide Sequence:NM_001256386.2Link to Protein Sequence:NP_001243315.1Re-query CCDS DB by Nucleotide ID:NM_001256386Re-query CCDS DB by Protein ID:NP_001243315Link to BLAST:NP_001243315.1
Original member Current member NCBI NM_001256387.2 NP_001243316.1 Accepted alive Link to Nucleotide Sequence:NM_001256387.2Link to Protein Sequence:NP_001243316.1Re-query CCDS DB by Nucleotide ID:NM_001256387Re-query CCDS DB by Protein ID:NP_001243316Link to BLAST:NP_001243316.1
Original member Current member NCBI NM_144620.4 NP_653221.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144620.4Link to Protein Sequence:NP_653221.1Re-query CCDS DB by Nucleotide ID:NM_144620Re-query CCDS DB by Protein ID:NP_653221Link to BLAST:NP_653221.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243315.1 335 Q96DD0-1 335 100% 0 0
NP_001243316.1 335 Q96DD0-1 335 100% 0 0
NP_653221.1 335 Q96DD0-1 335 100% 0 0

Chromosomal Locations for CCDS 766.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 100149042 100149097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100152385 100152524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100155051 100155203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100156172 100156317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100158231 100158367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100159259 100159415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100160466 100160571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100168404 100168516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGACAGAAAATGTGGTTTGTACTGGGGCTGTCAATGCTGTAAAGGAAGTTTGGGAAAAAAGAATAAAGA
AACTCAATGAAGACCTGAAGCGAGAGAAGGAATTTCAACACAAGCTAGTGCGGATCTGGGAAGAACGAGT
AAGCTTAACCAAGCTAAGAGAAAAGGTCACCAGGGAAGATGGAAGAGTCATTTTGAAGATAGAAAAAGAG
GAATGGAAGACCCTCCCTTCTTCTCTGCTGAAACTGAATCAACTACAGGAATGGCAACTTCATAGAACTG
GTTTGCTGAAAATTCCTGAATTCATTGGAAGATTCCAGAACCTCATTGTGTTAGATTTATCTCGAAACAC
AATTTCAGAGATACCACCAGGGATTGGACTGCTTACTAGACTTCAGGAACTGATTCTCAGCTACAACAAA
ATCAAGACTGTCCCCAAGGAACTAAGTAATTGTGCCAGCTTGGAGAAACTAGAACTGGCTGTTAACAGAG
ATATATGTGATCTTCCACAAGAGCTCAGCAATCTGCTAAAACTTACTCACCTTGATCTGAGTATGAACGA
TTTTACTACAATCCCTCTTGCTGTGTTGAACATGCCTGCCCTTGAGTGGCTGGACATGGGAAGCAACAAA
CTTGAACAACTTCCTGATACTATAGAAAGAATGCAAAATCTACATACGTTATGGCTGCAACGAAATGAAA
TAACATGCTTGCCTCAAACAATCAGCAATATGAAAAATCTGGGTACTCTTGTTCTCAGCAACAATAAACT
GCAAGATATTCCAGTATGCATGGAAGAAATGGCAAATCTGAGGTTTGTCAACTTCAGAGACAACCCACTG
AAATTGAAAGTATCACTTCCTCCCAGTGAAGGCACAGATGAAGAAGAGGAACGGGAATTATTTGGCCTTC
AGTTTATGCACACATACATACAAGAGTCACGGAGAAGAGCAGATCACCAAGTCAACGGTTCAACTACTTT
ACCAATCTCCATAAATACGGATGGATAA

Translation (335 aa):
MTENVVCTGAVNAVKEVWEKRIKKLNEDLKREKEFQHKLVRIWEERVSLTKLREKVTREDGRVILKIEKE
EWKTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQNLIVLDLSRNTISEIPPGIGLLTRLQELILSYNK
IKTVPKELSNCASLEKLELAVNRDICDLPQELSNLLKLTHLDLSMNDFTTIPLAVLNMPALEWLDMGSNK
LEQLPDTIERMQNLHTLWLQRNEITCLPQTISNMKNLGTLVLSNNKLQDIPVCMEEMANLRFVNFRDNPL
KLKVSLPPSEGTDEEEERELFGLQFMHTYIQESRRRADHQVNGSTTLPISINTDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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