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Report for CCDS76833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76833.1 Public Homo sapiens 16 CEP20 24 110 108 CCDS HistoryNCBI Gene:123811Re-query CCDS DB by CCDS ID:76833.1Re-query CCDS DB by GeneID:123811See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76833.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000573429.5 ENSP00000461830.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000573429.5Link to Ensembl Protein Viewer:ENSP00000461830.1Re-query CCDS DB by Nucleotide ID:ENST00000573429Re-query CCDS DB by Protein ID:ENSP00000461830
Original member Current member NCBI NM_001304499.2 NP_001291428.1 Accepted alive Link to Nucleotide Sequence:NM_001304499.2Link to Protein Sequence:NP_001291428.1Re-query CCDS DB by Nucleotide ID:NM_001304499Re-query CCDS DB by Protein ID:NP_001291428Link to BLAST:NP_001291428.1

Chromosomal Locations for CCDS 76833.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 15867440 15867516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15873491 15873627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15879804 15879888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15882949 15883020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15884008 15884205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15888558 15888585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGCGACTGTGGCAGAGTTGAAGGCTGTTTTAAAGGACACCTTGGAAAAAAAGGGGGTATTAGGGCATT
TAAAAGCAAGGATCCGAGCTGAAGTTTTCAATGCCCTAGATGATGACCGTGAACCCCGACCATCATTGTC
TCATGAAAACCTTCTAATTAATGAATTAATTCGAGAGTATTTAGAATTCAACAAATATAAGTATACAGCA
TCTGTCCTCATAGCAGCTCACTGCATCCTCCGCCTCCTGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCC
GAGTACCTGGAACTACAGAATCTGGTCAACCTGTAGTTCCGTTGGACAGACAGTTTCTCATCCATGAACT
AAATGCATTTGAAGAATCAAAGGATAATACAATACCTCTTTTATATGGGATTTTAGCCCATTTCTTGCGT
GGAACTAAGGATGGCATCCAGAATGCATTTCTGAAAGGGCCTTCACTTCAGCCTTCAGACCCAAGTCTTG
GCAGACAACCTAGTAGAAGAAAGCCAATGGATGACCACCTAAGAAAGGAGGAACAGAAAAGTACTAACAT
TGAAGATCTTCATGTTTCTCAGGCAGTCAACAGATAA

Translation (198 aa):
MATVAELKAVLKDTLEKKGVLGHLKARIRAEVFNALDDDREPRPSLSHENLLINELIREYLEFNKYKYTA
SVLIAAHCILRLLGSSSSPASASRVPGTTESGQPVVPLDRQFLIHELNAFEESKDNTIPLLYGILAHFLR
GTKDGIQNAFLKGPSLQPSDPSLGRQPSRRKPMDDHLRKEEQKSTNIEDLHVSQAVNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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